Glyma03g30490 - SoyBase

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Report for Sequence Feature Glyma03g30490

Feature Type:	gene_model
Chromosome:	Gm03
Start:	38445840
stop:	38448433
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g30490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G03010	AT	Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein \| chr4:1329952-1331139 FORWARD LENGTH=395	SoyBase	E_val: 0	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
PTHR26393	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR26393:SF474	Panther		JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_G7I2T3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7I2T3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JNP7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JNP7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g30490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g30490

Paralog	Evidence	Comments
Glyma19g33410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g30490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g148500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g30490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g30490

Limit To All Plant Sequences

>Glyma03g30490.3   sequence type=transcript   gene model=Glyma03g30490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAGATATTATAGATAGAGAAAGAAAGAAAGAAAGTGGGTATTGTAATGTTGTGGCAGTGATTGTAGTAGTAGTATATGCAAAGAAAGCCTAAATGATGAAAAGGTTGCAAAGGCAACATTGAAGGCAACAAAAGCAACACAGATTCAGCAAGGAATTGCTTCTCCTCCAAGCCAGCTATATCCAGTTTTCCGCCATTAAAACGTTCACACGATTTCTCACGAGAAAACCATCCAGCTCTAAAAAGCAACCCTCCCATTTTCCTATAAAAACCCATCGCCACCGCTTTTTTCTCTCTAAGTTCCAATGGACGACGTCGTAGCTTTCTGCACTTTGCTTTTCGTTTGCTTCCTCCATTCCGTGAGAGGGATTTTAGACCCCAACGATTTCCTCGCTCTGCAATCCATTCGGAAATCCCTTCACGACGTTCCCGGTTCCAATTTCTTCTCCTCGTGGGACTTCACCGCCGACCCCTGCAACTTCGCCGGCGTTTTCTGCGCCGACGACAAAGTCATCGCACTCAACCTCGGCGATCCGAGAGCCGGTTCGCCCGGTCTGACCGGAAAACTAGACCCTTCCATTTCCAAACTCTCCGCTCTCGCCGACTTCACCGTCGTTCCAGGAAGAATCTACGGTCCTCTCCCTCAGTCTCTCTCTCAGTTGAAAAACCTCCGCTTCCTCGGCGTCAGCAGGAACTTCATCTCCGGCGAGATTCCTGCAGGTCTAGGTCAGCTCCGGAACCTCAGGACAATCGATCTCAGCTACAACCAACTCTCCGGAGCAATTCCTCCGTCCATCGGAAAAATGCCGCAGCTAACAAACCTATTCCTCTGCCACAACCGTCTCTCTGGTTCGGTTCCTTCATTCGCTTCGGCTTATTCCCTGACCCATCTTGAACTCAAACACAACATTCTCTCCGGTTCGCTCGCACAGGATTCTCTCCCTGCTTCCCTACAGTACCTCTCTTTATCATGGAACCGGTTCACTGGACCGGTCGACGGGCTCTTAACCCGGCTCAACCGGCTTAACTTCCTGGACCTTAGTTTAAACCAGTTCACAGGCCCAATCCCGGCCCAAATATTCACATTCCCTCTCACAAACCTCCAACTCGAAAGAAACCAGTTCTCCGGTCCAATCCAACCGTTTAACGAGGTGATGATCCAGACCGTTGATCTCAGCTACAACCGGTTATCCGGTGAGGTGTCGCCCATGCTAGCGAACGTGCAGAATCTGTACCTGAACAACAACGGGTTCACGGGGCAGGTACCGGGCAGCTTCGTGGAGCGGTTGTTAGCGGCGGGCATTCAGATACTGTATTTGCAGCACAATTTTCTGACCGGAATCGCGATAAGCCCGACGGCGGAGATTCCGGTGAGCAGCACCCTGTGTTTGCAGTATAACTGCATGGTGCCGCCGGTTCAGACGGCGTGCCCCTTCAACGCTGGCAGAAGAAAAATAAGGCCACCTCAGCAGTGTAACCGCTAAAGGCTAAACTGAAGCTTGGTACAGTGGGATATAGCTAATTCTGACCGTTGTAACTACAAAAACACAACAAAGCCATATTGTACAGGCTTTTTTAC

Coding sequences of Glyma03g30490

Limit To All Plant Sequences

>Glyma03g30490.2   sequence type=CDS   gene model=Glyma03g30490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGACGTCGTAGCTTTCTGCACTTTGCTTTTCGTTTGCTTCCTCCATTCCGTGAGAGGGATTTTAGACCCCAACGATTTCCTCGCTCTGCAATCCATTCGGAAATCCCTTCACGACGTTCCCGGTTCCAATTTCTTCTCCTCGTGGGACTTCACCGCCGACCCCTGCAACTTCGCCGGCGTTTTCTGCGCCGACGACAAAGTCATCGCACTCAACCTCGGCGATCCGAGAGCCGGTTCGCCCGGTCTGACCGGAAAACTAGACCCTTCCATTTCCAAACTCTCCGCTCTCGCCGACTTCACCGTCGTTCCAGGAAGAATCTACGGTCCTCTCCCTCAGTCTCTCTCTCAGTTGAAAAACCTCCGCTTCCTCGGCGTCAGCAGGAACTTCATCTCCGGCGAGATTCCTGCAGGTCTAGGTCAGCTCCGGAACCTCAGGACAATCGATCTCAGCTACAACCAACTCTCCGGAGCAATTCCTCCGTCCATCGGAAAAATGCCGCAGCTAACAAACCTATTCCTCTGCCACAACCGTCTCTCTGGTTCGGTTCCTTCATTCGCTTCGGCTTATTCCCTGACCCATCTTGAACTCAAACACAACATTCTCTCCGGTTCGCTCGCACAGGATTCTCTCCCTGCTTCCCTACAGTACCTCTCTTTATCATGGAACCGGTTCACTGGACCGGTCGACGGGCTCTTAACCCGGCTCAACCGGCTTAACTTCCTGGACCTTAGTTTAAACCAGTTCACAGGCCCAATCCCGGCCCAAATATTCACATTCCCTCTCACAAACCTCCAACTCGAAAGAAACCAGTTCTCCGGTCCAATCCAACCGTTTAACGAGGTGATGATCCAGACCGTTGATCTCAGCTACAACCGGTTATCCGGTGAGGTGTCGCCCATGCTAGCGAACGTGCAGAATCTGTACCTGAACAACAACGGGTTCACGGGGCAGGTACCGGGCAGCTTCGTGGAGCGGTTGTTAGCGGCGGGCATTCAGATACTGTATTTGCAGCACAATTTTCTGACCGGAATCGCGATAAGCCCGACGGCGGAGATTCCGGTGAGCAGCACCCTGTGTTTGCAGTATAACTGCATGGTGCCGCCGGTTCAGACGGCGTGCCCCTTCAACGCTGGCAGAAGAAAAATAAGGCCACCTCAGCAGTGTAACCGCTAA

>Glyma03g30490.3   sequence type=CDS   gene model=Glyma03g30490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGACGTCGTAGCTTTCTGCACTTTGCTTTTCGTTTGCTTCCTCCATTCCGTGAGAGGGATTTTAGACCCCAACGATTTCCTCGCTCTGCAATCCATTCGGAAATCCCTTCACGACGTTCCCGGTTCCAATTTCTTCTCCTCGTGGGACTTCACCGCCGACCCCTGCAACTTCGCCGGCGTTTTCTGCGCCGACGACAAAGTCATCGCACTCAACCTCGGCGATCCGAGAGCCGGTTCGCCCGGTCTGACCGGAAAACTAGACCCTTCCATTTCCAAACTCTCCGCTCTCGCCGACTTCACCGTCGTTCCAGGAAGAATCTACGGTCCTCTCCCTCAGTCTCTCTCTCAGTTGAAAAACCTCCGCTTCCTCGGCGTCAGCAGGAACTTCATCTCCGGCGAGATTCCTGCAGGTCTAGGTCAGCTCCGGAACCTCAGGACAATCGATCTCAGCTACAACCAACTCTCCGGAGCAATTCCTCCGTCCATCGGAAAAATGCCGCAGCTAACAAACCTATTCCTCTGCCACAACCGTCTCTCTGGTTCGGTTCCTTCATTCGCTTCGGCTTATTCCCTGACCCATCTTGAACTCAAACACAACATTCTCTCCGGTTCGCTCGCACAGGATTCTCTCCCTGCTTCCCTACAGTACCTCTCTTTATCATGGAACCGGTTCACTGGACCGGTCGACGGGCTCTTAACCCGGCTCAACCGGCTTAACTTCCTGGACCTTAGTTTAAACCAGTTCACAGGCCCAATCCCGGCCCAAATATTCACATTCCCTCTCACAAACCTCCAACTCGAAAGAAACCAGTTCTCCGGTCCAATCCAACCGTTTAACGAGGTGATGATCCAGACCGTTGATCTCAGCTACAACCGGTTATCCGGTGAGGTGTCGCCCATGCTAGCGAACGTGCAGAATCTGTACCTGAACAACAACGGGTTCACGGGGCAGGTACCGGGCAGCTTCGTGGAGCGGTTGTTAGCGGCGGGCATTCAGATACTGTATTTGCAGCACAATTTTCTGACCGGAATCGCGATAAGCCCGACGGCGGAGATTCCGGTGAGCAGCACCCTGTGTTTGCAGTATAACTGCATGGTGCCGCCGGTTCAGACGGCGTGCCCCTTCAACGCTGGCAGAAGAAAAATAAGGCCACCTCAGCAGTGTAACCGCTAA

Predicted protein sequences of Glyma03g30490

Limit To All Plant Sequences

>Glyma03g30490.2   sequence type=predicted peptide   gene model=Glyma03g30490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDVVAFCTLLFVCFLHSVRGILDPNDFLALQSIRKSLHDVPGSNFFSSWDFTADPCNFAGVFCADDKVIALNLGDPRAGSPGLTGKLDPSISKLSALADFTVVPGRIYGPLPQSLSQLKNLRFLGVSRNFISGEIPAGLGQLRNLRTIDLSYNQLSGAIPPSIGKMPQLTNLFLCHNRLSGSVPSFASAYSLTHLELKHNILSGSLAQDSLPASLQYLSLSWNRFTGPVDGLLTRLNRLNFLDLSLNQFTGPIPAQIFTFPLTNLQLERNQFSGPIQPFNEVMIQTVDLSYNRLSGEVSPMLANVQNLYLNNNGFTGQVPGSFVERLLAAGIQILYLQHNFLTGIAISPTAEIPVSSTLCLQYNCMVPPVQTACPFNAGRRKIRPPQQCNR*

>Glyma03g30490.3   sequence type=predicted peptide   gene model=Glyma03g30490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDDVVAFCTLLFVCFLHSVRGILDPNDFLALQSIRKSLHDVPGSNFFSSWDFTADPCNFAGVFCADDKVIALNLGDPRAGSPGLTGKLDPSISKLSALADFTVVPGRIYGPLPQSLSQLKNLRFLGVSRNFISGEIPAGLGQLRNLRTIDLSYNQLSGAIPPSIGKMPQLTNLFLCHNRLSGSVPSFASAYSLTHLELKHNILSGSLAQDSLPASLQYLSLSWNRFTGPVDGLLTRLNRLNFLDLSLNQFTGPIPAQIFTFPLTNLQLERNQFSGPIQPFNEVMIQTVDLSYNRLSGEVSPMLANVQNLYLNNNGFTGQVPGSFVERLLAAGIQILYLQHNFLTGIAISPTAEIPVSSTLCLQYNCMVPPVQTACPFNAGRRKIRPPQQCNR*

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