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Report for Sequence Feature Glyma03g30460

Feature Type:gene_model
Chromosome:Gm03
Start:38417462
stop:38420087
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g30460
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G63010AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr3:23289717-23290998 FORWARD LENGTH=358 SoyBaseE_val: 0ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0000303GO-bp Annotation by Michelle Graham. GO Biological Process: response to superoxide SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0007154GO-bp Annotation by Michelle Graham. GO Biological Process: cell communication SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0008219GO-bp Annotation by Michelle Graham. GO Biological Process: cell death SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009723GO-bp Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009739GO-bp Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus SoyBaseN/AISS
GO:0009740GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009755GO-bp Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009863GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009873GO-bp Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway SoyBaseN/AISS
GO:0009939GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0010325GO-bp Annotation by Michelle Graham. GO Biological Process: raffinose family oligosaccharide biosynthetic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0010476GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellin mediated signaling pathway SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0042538GO-bp Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response SoyBaseN/AISS
GO:0043069GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death SoyBaseN/AISS
GO:0048444GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ morphogenesis SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
KOG1515 KOG Arylacetamide deacetylase JGI ISS
PTHR23024Panther MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES JGI ISS
PTHR23024:SF10Panther CARBOXYLESTERASE-RELATED JGI ISS
PF07859PFAM alpha/beta hydrolase fold JGI ISS
UniRef100_G7I2T6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Gibberellic acid receptor-b n=1 Tax=Medicago truncatula RepID=G7I2T6_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1JNP5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNP5_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g30460
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g30460
ParalogEvidenceComments
Glyma19g33381 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g30460 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g148300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g30460
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g30460
>Glyma03g30460.1   sequence type=CDS   gene model=Glyma03g30460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGGCAGCAACCAAGTCAATCTCAATGAATCTAGGAGTGTTGTTCCTTTAAATACATGGGTGCTTATCTCCAATTTCAAGTTGTCTTACAAGCTTCTCAGACGTGACGATGGAACGTTCAATCGTGAGTTGGCGGAGTATCTCGATAGGAAGGTCCCCGCAAACGCAATTCCCGTTGAAGGTGTGTTTTCAATCGATCACGTTGATAGAAACGCGGGTTTATTCTACCGTGTGTACTTACCAACCTCAGGAAACGAGGCTCAATGGGGTATCAGAGACCTTGAGAAGCCGTTAAGTACTACAGAAATTGTTCCTGTAATCGTATTCTTTCACGGGGGAAGCTTCTCGCATTCCTCGGCCAACAGTCACATCTACGACACCTTCTGCCGCCGCCTTGTGAGGATTTGCAAGGCTGCTGTGGTGTCTGTGAACTACCGGCGGTCACCGGAGCATCGGTATCCTTGTGCATACGACGACGGCTGGGCGGCATTGCGGTGGGTGAAGTCGAGAGCATGGCTGCAAAGTGGGAGGGAGGCCAAGGTTCATGTCTACTTGGCAGGGGACAGTTCTGGAGGGAACATTGTTCATCATGTGGCAGTGAGGGCTGCAGAGGAGGAAATTGAGGTCCTGGGGAATATTCTTCTCCACCCTTTGTTTGGTGGGGAGAAGAGAACGGAATCAGAATTGAGATTGGATGGGAAATACTTTGTGAGGCTTAAGGATCGTGATTGGTATTGGAGAGCTTTTCTACCTGAAGGAGAGAATAGAGACCACCCTGCTTGCAACCCTTTTGGACCAAGGGGGAGAAGCATTGAAGGACTCAAATTCCCTAAAAGTCTTGTTTGTGTGGCTGGTTTGGATCTTCTGCAGGATTGGCAATTGGCATATGCAAAAGGTCTTGAGGATTGTGGACAACAGGTCAAGCTTCTTTTTCTCAAGGAAGCCACTATTGGCTTCTACTTCTTGCCAAACAATGACCATTTCTATTGCCTCATGAAAGAAATCAACAACTTTGTCAATTCTGATTCTGACTGTTAA
Predicted protein sequences of Glyma03g30460
>Glyma03g30460.1   sequence type=predicted peptide   gene model=Glyma03g30460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAGSNQVNLNESRSVVPLNTWVLISNFKLSYKLLRRDDGTFNRELAEYLDRKVPANAIPVEGVFSIDHVDRNAGLFYRVYLPTSGNEAQWGIRDLEKPLSTTEIVPVIVFFHGGSFSHSSANSHIYDTFCRRLVRICKAAVVSVNYRRSPEHRYPCAYDDGWAALRWVKSRAWLQSGREAKVHVYLAGDSSGGNIVHHVAVRAAEEEIEVLGNILLHPLFGGEKRTESELRLDGKYFVRLKDRDWYWRAFLPEGENRDHPACNPFGPRGRSIEGLKFPKSLVCVAGLDLLQDWQLAYAKGLEDCGQQVKLLFLKEATIGFYFLPNNDHFYCLMKEINNFVNSDSDC*






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