Glyma03g30450 - SoyBase

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Report for Sequence Feature Glyma03g30450

Feature Type:	gene_model
Chromosome:	Gm03
Start:	38391603
stop:	38395107
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g30450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G20770	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 59 Blast hits to 59 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:7215345-7216648 REVERSE LENGTH=215	SoyBase	E_val: 8.00E-52	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1JNP4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNP4_SOYBN	SoyBase	E_val: 5.00E-147	ISS
UniRef100_Q01HF6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0157K09-H0214G12.1 protein n=2 Tax=Oryza sativa RepID=Q01HF6_ORYSA	SoyBase	E_val: 1.00E-36	ISS

Expression Patterns of Glyma03g30450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g30450

Paralog	Evidence	Comments
Glyma19g33370	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g30450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g148200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g30450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g30450

Limit To All Plant Sequences

>Glyma03g30450.4   sequence type=transcript   gene model=Glyma03g30450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCAAAATTTCACTGGCCGTGTGTAGCCAAGTCTTTCTCTATTTTCTTTTCCTTCTCCTTCTCCTTCCCGAATCGTTTCATTTCTCCCACGAGACTCACTCATATCATCCTCATCCTTCGTCTCAGTCTCACAGGACCCAATATAAATAAGAAGCTTCTAAATCTCTTCACTATCTGGGTTAGTGGAAGAATTCTGTGGTGAAGTAAAGTGACTAATTGCCTTAAATCAGAAACGACATCAAGTTCCATGGAAGAAGAGCATCAATGTTCTAGAAGTGGTGAAGAACCACAGACACAGGAACTGGATGGAGAAGATCAACAGCTGCAGCATCAATGCCAACAACCTGGAGCTGAAGAGAAACTTGTATTGCAATTTATGGATTCAATGGATAACTACCTATCCCTCTTTGATGTAGTGTCCTCCACCCTTCGACAGGGATGGTTTGACTTAGCTAGTGCTCGACATTCCATGGGTGCTTCTCGCATTAATAGTTCTTTATTGGACCTGAAATTGCATTCAGCCGCTACAACATTGAAGATAACCAACTATGATGGTACACAGCCACGCTTCATGTTGCATAAATGGGTATCCTCTGAACATGAAAGTACTCAGTTAGAAGATGAGAATGTGCAGTCACAAGATAGTAGTAGTGTGAAATCTTCTGGACTTGCAGATAATGCTGAAGTTCAAAATGAGCGATCCAAGTCCTTGTCAGTTTTTGGAGTTTTAATTTCCCCAAAGCTTCGAGCCTCCCAGCTGTCATTTGAGAAAGCACTAGAGACACTCATAGAAATAGCTAATTTGCAAAAGTCATTATTATATTCTTTTCACCAACTTCAAAAGGTGGAAGATACCAAAGAATAAAAAAGTACCAGCTCCTTCAGGCTGCTTGAAATGCGTCGCATGTGGACAATCTGATTGGAGTATTGAGGATCCAGCATTCAATGATTTTGGTGTTCTATTCTATTTATTGATGCATCATCAGAAGACAGTGAACATCTTCCTCATTATGCTTATTTCATTTTTATATTGGTTACAAAATACAAATACATGAACATTGGTTATAGTGAGGGGGAAGGGTTTTACTTTTACCCAACGCAGGCGTTTAGTTTTGCGCATGCCGAAGGGGCGTAACCTTTCTCTGCCACATATATGGCCGGAAGCCAATACAAAGGATTCATTTTGGTTGACTGAATTAATTTACTAATGAAAATATTATCATTCTAAAAAGAACCCCTATTTGAGTGTTTAGGACTATAATGAGTTTAGTTTTGTCAGGGGATAAGTTTTTATTTTATTTTATTTTTTATATCCTAAAATTATGTTTGTCAGGAATAGTTAAAATACTTTGATTAGTCATTGTATGTATCGTAAAAATTAAAGGGAGCGTTTGGTTTGAG

>Glyma03g30450.5   sequence type=transcript   gene model=Glyma03g30450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCAAAATTTCACTGGCCGTGTGTAGCCAAGTCTTTCTCTATTTTCTTTTCCTTCTCCTTCTCCTTCCCGAATCGTTTCATTTCTCCCACGAGACTCACTCATATCATCCTCATCCTTCGTCTCAGTCTCACAGGACCCAATATAAATAAGAAGCTTCTAAATCTCTTCACTATCTGAAACGACATCAAGTTCCATGGAAGAAGAGCATCAATGTTCTAGAAGTGGTGAAGAACCACAGACACAGGAACTGGATGGAGAAGATCAACAGCTGCAGCATCAATGCCAACAACCTGGAGCTGAAGAGAAACTTGTATTGCAATTTATGGATTCAATGGATAACTACCTATCCCTCTTTGATGTAGTGTCCTCCACCCTTCGACAGGGATGGTTTGACTTAGCTAGTGCTCGACATTCCATGGGTGCTTCTCGCATTAATAGTTCTTTATTGGACCTGAAATTGCATTCAGCCGCTACAACATTGAAGATAACCAACTATGATGGTACACAGCCACGCTTCATGTTGCATAAATGGGTATCCTCTGAACATGAAAGTACTCAGTTAGAAGATGAGAATGTGCAGTCACAAGATAGTAGTAGTGTGAAATCTTCTGGACTTGCAGATAATGCTGAAGTTCAAAATGAGCGATCCAAGTCCTTGTCAGTTTTTGGAGTTTTAATTTCCCCAAAGCTTCGAGCCTCCCAGCTGTCATTTGAGAAAGCACTAGAGACACTCATAGAAATAGCTAATTTGCAAAAGTCATTATTATATTCTTTTCACCAACTTCAAAAGGTGGAAGATACCAAAGAATAAAAAAGTACCAGCTCCTTCAGGCTGCTTGAAATGCGTCGCATGTGGACAATCTGATTGGAGTATTGAGGATCCAGCATTCAATGATTTTGGTGTTCTATTCTATTTATTGATGCATCATCAGAAGACAGTGAACATCTTCCTCATTATGCTTATTTCATTTTTATATTGGTTACAAAATACAAATACATGAACATTGGTTATAGTGAGGGGGAAGGGTTTTACTTTTACCCAACGCAGGCGTTTAGTTTTGCGCATGCCGAAGGGGCGTAACCTTTCTCTGCCACATATATGGCCGGAAGCCAATACAAAGGATTCATTTTGGTTGACTGAATTAATTTACTAATGAAAATATTATCATTCTAAAAAGAACCCCTATTTGAGTGTTTAGGACTATAATGAGTTTAGTTTTGTCAGGGGATAAGTTTTTATTTTATTTTATTTTTTATATCCTAAAATTATGTTTGTCAGGAATAGTTAAAATACTTTGATTAGTCATTGTATGTATCGTAAAAATTAAAGGGAGCGTTTGGTTTGAG

Coding sequences of Glyma03g30450

Limit To All Plant Sequences

>Glyma03g30450.2   sequence type=CDS   gene model=Glyma03g30450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAGCATCAATGTTCTAGAAGTGGTGAAGAACCACAGACACAGGAACTGGATGGAGAAGATCAACAGCTGCAGCATCAATGCCAACAACCTGGAGCTGAAGAGAAACTTGTATTGCAATTTATGGATTCAATGGATAACTACCTATCCCTCTTTGATGTAGTGTCCTCCACCCTTCGACAGGGATGGTTTGACTTAGCTAGTGCTCGACATTCCATGGGTGCTTCTCGCATTAATAGTTCTTTATTGGACCTGAAATTGCATTCAGCCGCTACAACATTGAAGATAACCAACTATGATGGTACACAGCCACGCTTCATGTTGCATAAATGGGTATCCTCTGAACATGAAAGTACTCAGTTAGAAGATGAGAATGTGCAGTCACAAGATAGTAGTAGTGTGAAATCTTCTGATAATGCTGAAGTTCAAAATGAGCGATCCAAGTCCTTGTCAGTTTTTGGAGTTTTAATTTCCCCAAAGCTTCGAGCCTCCCAGCTGTCATTTGAGAAAGCACTAGAGACACTCATAGAAATAGCTAATTTGCAAAAGTCATTATTATATTCTTTTCACCAACTTCAAAAGGTGGAAGATACCAAAGAATAA

>Glyma03g30450.4   sequence type=CDS   gene model=Glyma03g30450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAGCATCAATGTTCTAGAAGTGGTGAAGAACCACAGACACAGGAACTGGATGGAGAAGATCAACAGCTGCAGCATCAATGCCAACAACCTGGAGCTGAAGAGAAACTTGTATTGCAATTTATGGATTCAATGGATAACTACCTATCCCTCTTTGATGTAGTGTCCTCCACCCTTCGACAGGGATGGTTTGACTTAGCTAGTGCTCGACATTCCATGGGTGCTTCTCGCATTAATAGTTCTTTATTGGACCTGAAATTGCATTCAGCCGCTACAACATTGAAGATAACCAACTATGATGGTACACAGCCACGCTTCATGTTGCATAAATGGGTATCCTCTGAACATGAAAGTACTCAGTTAGAAGATGAGAATGTGCAGTCACAAGATAGTAGTAGTGTGAAATCTTCTGGACTTGCAGATAATGCTGAAGTTCAAAATGAGCGATCCAAGTCCTTGTCAGTTTTTGGAGTTTTAATTTCCCCAAAGCTTCGAGCCTCCCAGCTGTCATTTGAGAAAGCACTAGAGACACTCATAGAAATAGCTAATTTGCAAAAGTCATTATTATATTCTTTTCACCAACTTCAAAAGGTGGAAGATACCAAAGAATAA

>Glyma03g30450.5   sequence type=CDS   gene model=Glyma03g30450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGAGCATCAATGTTCTAGAAGTGGTGAAGAACCACAGACACAGGAACTGGATGGAGAAGATCAACAGCTGCAGCATCAATGCCAACAACCTGGAGCTGAAGAGAAACTTGTATTGCAATTTATGGATTCAATGGATAACTACCTATCCCTCTTTGATGTAGTGTCCTCCACCCTTCGACAGGGATGGTTTGACTTAGCTAGTGCTCGACATTCCATGGGTGCTTCTCGCATTAATAGTTCTTTATTGGACCTGAAATTGCATTCAGCCGCTACAACATTGAAGATAACCAACTATGATGGTACACAGCCACGCTTCATGTTGCATAAATGGGTATCCTCTGAACATGAAAGTACTCAGTTAGAAGATGAGAATGTGCAGTCACAAGATAGTAGTAGTGTGAAATCTTCTGGACTTGCAGATAATGCTGAAGTTCAAAATGAGCGATCCAAGTCCTTGTCAGTTTTTGGAGTTTTAATTTCCCCAAAGCTTCGAGCCTCCCAGCTGTCATTTGAGAAAGCACTAGAGACACTCATAGAAATAGCTAATTTGCAAAAGTCATTATTATATTCTTTTCACCAACTTCAAAAGGTGGAAGATACCAAAGAATAA

Predicted protein sequences of Glyma03g30450

Limit To All Plant Sequences

>Glyma03g30450.2   sequence type=predicted peptide   gene model=Glyma03g30450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEHQCSRSGEEPQTQELDGEDQQLQHQCQQPGAEEKLVLQFMDSMDNYLSLFDVVSSTLRQGWFDLASARHSMGASRINSSLLDLKLHSAATTLKITNYDGTQPRFMLHKWVSSEHESTQLEDENVQSQDSSSVKSSDNAEVQNERSKSLSVFGVLISPKLRASQLSFEKALETLIEIANLQKSLLYSFHQLQKVEDTKE*

>Glyma03g30450.4   sequence type=predicted peptide   gene model=Glyma03g30450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEHQCSRSGEEPQTQELDGEDQQLQHQCQQPGAEEKLVLQFMDSMDNYLSLFDVVSSTLRQGWFDLASARHSMGASRINSSLLDLKLHSAATTLKITNYDGTQPRFMLHKWVSSEHESTQLEDENVQSQDSSSVKSSGLADNAEVQNERSKSLSVFGVLISPKLRASQLSFEKALETLIEIANLQKSLLYSFHQLQKVEDTKE*

>Glyma03g30450.5   sequence type=predicted peptide   gene model=Glyma03g30450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEEHQCSRSGEEPQTQELDGEDQQLQHQCQQPGAEEKLVLQFMDSMDNYLSLFDVVSSTLRQGWFDLASARHSMGASRINSSLLDLKLHSAATTLKITNYDGTQPRFMLHKWVSSEHESTQLEDENVQSQDSSSVKSSGLADNAEVQNERSKSLSVFGVLISPKLRASQLSFEKALETLIEIANLQKSLLYSFHQLQKVEDTKE*

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