Glyma03g30331 - SoyBase

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Report for Sequence Feature Glyma03g30331

Feature Type:	gene_model
Chromosome:	Gm03
Start:	38296796
stop:	38297339
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g30331

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12012	AT	Annotation by Michelle Graham. TAIR10: conserved peptide upstream open reading frame 20 \| chr3:3820787-3821276 FORWARD LENGTH=61	SoyBase	E_val: 4.00E-21	ISS
UniRef100_I1JNN3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNN3_SOYBN	SoyBase	E_val: 2.00E-37	ISS

Expression Patterns of Glyma03g30331

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g30331 not represented in the dataset	Glyma03g30331 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g30331

Paralog	Evidence	Comments
Glyma19g33250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g30331 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g147100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g30331

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g30331

Limit To All Plant Sequences

>Glyma03g30331.1   sequence type=CDS   gene model=Glyma03g30331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGAAAAGAAGAATACTGCCTCTACTCTCAAGCGCATTTTAGTGAATTGTTCATCTCAGGCAAAAGCATATGGGAGCTGTGTTGCAGCGAAGGTTCCAGATATTGAACGTGATATGTGTGTGAAGGAATTTGAGGCACTAAAAAGTTGTATGCAGAATATGGTATTGAATTCTGCAATTGGCTTGTGA

Predicted protein sequences of Glyma03g30331

Limit To All Plant Sequences

>Glyma03g30331.1   sequence type=predicted peptide   gene model=Glyma03g30331   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEKKNTASTLKRILVNCSSQAKAYGSCVAAKVPDIERDMCVKEFEALKSCMQNMVLNSAIGL*

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