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Report for Sequence Feature Glyma03g30280

Feature Type:gene_model
Chromosome:Gm03
Start:38218285
stop:38220347
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g30280
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G41950AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 53 Blast hits to 53 proteins in 24 species: Archae - 0; Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17513137-17514029 FORWARD LENGTH=266 SoyBaseE_val: 9.00E-79ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I0Z1F9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Flavokinase-domain-containing protein n=1 Tax=Coccomyxa subellipsoidea C-169 RepID=I0Z1F9_9CHLO SoyBaseE_val: 7.00E-06ISS
UniRef100_I1JNM9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNM9_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g30280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g30280
ParalogEvidenceComments
Glyma19g33200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g30280 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g146600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g30280
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g30280
>Glyma03g30280.1   sequence type=CDS   gene model=Glyma03g30280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTCAATTTCTTTAGGTTCCTTCATCCTCACACCATGCAAGTTCCGCCCTTTTCTTCAAACCAAACACCAACCCATATTCCGCACTCTCTCCCCAATTCCCCTGACACAAAAACCCACTTTTCTTCGAGCCACAGACTCGAACATCGACGCCCCCATTTCCCTCCCCGAGGGCGCGTCCTTCGTTTCCATCCCAGAAATCATCGAGAAGGACTGGTCCGTGCTTGATTGCGCCGAACACCGAACCACTGACCGCATTATAGCTTCCGGAAACATCGAACAGAGTTCGAGGGTTTTGGTCTCAACTGGGTCAGAAGACTTTGTTGATTCCTTAGCGGGTTTAACTCCCTCTGTGTTTGTTGTTCATGACTCGCTTCTGACACTGGCTTGCATTAAAGAAAAATATGACAGGGTTAAGTGTTGGCAAGGGGAGATTATTTATGTTCCGGAAAAGTGGGCTCCTTTTGATGCTGTGTTTCTTTATTTCCTTCCCGCGTTGCCCTTCAAGCTCCACCAAATTTTGGAGTCTTTGGCTGGGAAATGTGCACCGGGTGGAAGGGTGATTATCAGTCATCCTAAAGGGAAAGAAGTATTAGAACAGCAACGAAAACAGTACCCAGATGTAGTAGTTTCTGACCTACCTAATAAAACATATTTACAAAGTGTTGCAGCTGCCCATTCTTTTGACGTGGCTGAATTTGTGGATGAACCTGGCCTTTATTTAGCCGTTTTGATCTGCTCGAGAGCTTAA
Predicted protein sequences of Glyma03g30280
>Glyma03g30280.1   sequence type=predicted peptide   gene model=Glyma03g30280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSISLGSFILTPCKFRPFLQTKHQPIFRTLSPIPLTQKPTFLRATDSNIDAPISLPEGASFVSIPEIIEKDWSVLDCAEHRTTDRIIASGNIEQSSRVLVSTGSEDFVDSLAGLTPSVFVVHDSLLTLACIKEKYDRVKCWQGEIIYVPEKWAPFDAVFLYFLPALPFKLHQILESLAGKCAPGGRVIISHPKGKEVLEQQRKQYPDVVVSDLPNKTYLQSVAAAHSFDVAEFVDEPGLYLAVLICSRA*






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