Glyma03g30250 - SoyBase

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Report for Sequence Feature Glyma03g30250

Feature Type:	gene_model
Chromosome:	Gm03
Start:	38188406
stop:	38193062
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g30250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G58040	AT	Annotation by Michelle Graham. TAIR10: seven in absentia of Arabidopsis 2 \| chr3:21489612-21491085 FORWARD LENGTH=308	SoyBase	E_val: 0	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0016567	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein ubiquitination	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG3002	KOG	Zn finger protein	JGI		ISS
PTHR10315	Panther	SEVEN IN ABSENTIA HOMOLOG	JGI		ISS
PF03145	PFAM	Seven in absentia protein family	JGI		ISS
UniRef100_H8WVC4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin ligase-like protein n=1 Tax=Lotus japonicus RepID=H8WVC4_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_I1JNM6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JNM6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g30250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g30250

Paralog	Evidence	Comments
Glyma19g33170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g30250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g146300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g30250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g30250

Limit To All Plant Sequences

>Glyma03g30250.2   sequence type=transcript   gene model=Glyma03g30250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAACAACGAAACAGAGCACAATACAAGGAAATCAATCCTGCGATTTCGAAGCAGAAGAAGGACAAGAACAAAAAACGTTGGTATTTTTATTCTTCTTCTTCTTTAATATCCATATGCATACCAACAAGACACGCTTTTTTCTTCAATCTCCATAGCGGGGGATGTAGCATGCCATAAAAGCAGGAGCTCTTGTTCCTTGTCATCTAGAAAGAAATACTGTAGATCTGGGTTAGCAATGGCTCCTGGAAGCAGTGTTTTCAAAGAAGTTCTTGAATCTCACCTGATGTCTTCAGATTATGAAATGGGAAAAGCTAAATCTGAGGCCAAGAGTAACAGTACATCTACAAAATCTAGCATTGGGTTGAGTGGAAAGAGTGGAATTAGTTCAAACAATGGCGTGTATGAATTACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAATATCTGCCCGTCCTGCCATCATGATCTTGGGAATATAAGATGTTTGGCTTTGGAGAAAGTGGCAGAATCATTGGAGCTTCCTTGCAGATATCAGAGTCTTGGTTGCCATGATATATTCCCGTACTATACTAAGCTGAAGCATGAGCAAAATTGTGGATTTCGTCCATACAATTGCCCCTATGCTGGATCTGAGTGCTCTGTGATGGGTGATATTCCTACTCTTGTTGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCATCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTCAATAGTTTTGGAAGACATTTCTGCTTGCACTTTGAGGCGTTCCAGCTTGGCTCGGCTCCAGTGTATATGGCTTTTTTGCGATTCATGGGTGATGACAATGAAGCAAAGAAATTCAGCTACAGCTTGGAGGTTGGTGCAAATGGGCGCAAACTTATATGGCAAGGAATTCCAAGGAGCATTCGGGACAGTCATAGAAAAGTTCGAGATAGTCAAGATGGACTTATAATTCAGAGGAACCTAGCCCTTTATTTTTCTGGTGGAGAAAGACAAGAGTTGAAGTTGAGAATCACTGGTCGTATATGGAGAGAAGAATGAGACATGTAAATATAATGTTATTTAGAGATGTAACCATTGTTTTAAGATTTTGCTCTCTGGCAAAGAATGAAGCACTGTATCTGCTTAAGTTAATCTCTCCATAGATTTCTCTTTCATTTTCCTTTTTGAACAAAACCATGTGCTTCTGAATCTGAATATTGGAAATCAAACTTACACAGTTAAG

>Glyma03g30250.3   sequence type=transcript   gene model=Glyma03g30250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAGAAAAGAAACAACGAAACAGAGCACAATACAAGGAAATCAATCCTGCGATTTCGAAGCAGAAGAAGGACAAGAACAAAAAACATGTAGCATGCCATAAAAGCAGGAGCTCTTGTTCCTTGTCATCTAGAAAGAAATACTGTAGATCTGGGTTAGCAATGGCTCCTGGAAGCAGTGTTTTCAAAGAAGTTCTTGAATCTCACCTGATGTCTTCAGATTATGAAATGGGAAAAGCTAAATCTGAGGCCAAGAGTAACAGTACATCTACAAAATCTAGCATTGGGTTGAGTGGAAAGAGTGGAATTAGTTCAAACAATGGCGTGTATGAATTACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAATATCTGCCCGTCCTGCCATCATGATCTTGGGAATATAAGATGTTTGGCTTTGGAGAAAGTGGCAGAATCATTGGAGCTTCCTTGCAGATATCAGAGTCTTGGTTGCCATGATATATTCCCGTACTATACTAAGCTGAAGCATGAGCAAAATTGTGGATTTCGTCCATACAATTGCCCCTATGCTGGATCTGAGTGCTCTGTGATGGGTGATATTCCTACTCTTGTTGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCATCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTCAATAGTTTTGGAAGACATTTCTGCTTGCACTTTGAGGCGTTCCAGCTTGGCTCGGCTCCAGTGTATATGGCTTTTTTGCGATTCATGGGTGATGACAATGAAGCAAAGAAATTCAGCTACAGCTTGGAGGTTGGTGCAAATGGGCGCAAACTTATATGGCAAGGAATTCCAAGGAGCATTCGGGACAGTCATAGAAAAGTTCGAGATAGTCAAGATGGACTTATAATTCAGAGGAACCTAGCCCTTTATTTTTCTGGTGGAGAAAGACAAGAGTTGAAGTTGAGAATCACTGGTCGTATATGGAGAGAAGAATGAGACATGTAAATATAATGTTATTTAGAGATGTAACCATTGTTTTAAGATTTTGCTCTCTGGCAAAGAATGAAGCACTGTATCTGCTTAAGTTAATCTCTCCATAGATTTCTCTTTCATTTTCCTTTTTGAACAAAACCATGTGCTTCTGAATCTGAATATTGGAAATCAAACTTACACAGTTAAGTTTTTTTTTTTTTTTTTTTGCTCTAAGCTTTGGTGCGCTAAAGATATTCTCTAGTTAATACTCAAGAGTAATATAAATAACTTTCAAG

Coding sequences of Glyma03g30250

Limit To All Plant Sequences

>Glyma03g30250.1   sequence type=CDS   gene model=Glyma03g30250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCTGGAAGCAGTGTTTTCAAAGAAGTTCTTGAATCTCACCTGATGTCTTCAGATTATGAAATGGGAAAAGCTAAATCTGAGGCCAAGAGTAACAGTACATCTACAAAATCTAGCATTGGGTTGAGTGGAAAGAGTGGAATTAGTTCAAACAATGGCGTGTATGAATTACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAATATCTGCCCGTCCTGCCATCATGATCTTGGGAATATAAGATGTTTGGCTTTGGAGAAAGTGGCAGAATCATTGGAGCTTCCTTGCAGATATCAGAGTCTTGGTTGCCATGATATATTCCCGTACTATACTAAGCTGAAGCATGAGCAAAATTGTGGATTTCGTCCATACAATTGCCCCTATGCTGGATCTGAGTGCTCTGTGATGGGTGATATTCCTACTCTTGTTGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCATCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTCAATAGTTTTGGAAGACATTTCTGCTTGCACTTTGAGGCGTTCCAGCTTGGCTCGGCTCCAGTGTATATGGCTTTTTTGCGATTCATGGGTGATGACAATGAAGCAAAGAAATTCAGCTACAGCTTGGAGGTTGGTGCAAATGGGCGCAAACTTATATGGCAAGGAATTCCAAGGAGCATTCGGGACAGTCATAGAAAAGTTCGAGATAGTCAAGATGGACTTATAATTCAGAGGAACCTAGCCCTTTATTTTTCTGGTGGAGAAAGACAAGAGTTGAAGTTGAGAATCACTGGTCGTATATGGAGAGAAGAATGA

>Glyma03g30250.2   sequence type=CDS   gene model=Glyma03g30250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCTGGAAGCAGTGTTTTCAAAGAAGTTCTTGAATCTCACCTGATGTCTTCAGATTATGAAATGGGAAAAGCTAAATCTGAGGCCAAGAGTAACAGTACATCTACAAAATCTAGCATTGGGTTGAGTGGAAAGAGTGGAATTAGTTCAAACAATGGCGTGTATGAATTACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAATATCTGCCCGTCCTGCCATCATGATCTTGGGAATATAAGATGTTTGGCTTTGGAGAAAGTGGCAGAATCATTGGAGCTTCCTTGCAGATATCAGAGTCTTGGTTGCCATGATATATTCCCGTACTATACTAAGCTGAAGCATGAGCAAAATTGTGGATTTCGTCCATACAATTGCCCCTATGCTGGATCTGAGTGCTCTGTGATGGGTGATATTCCTACTCTTGTTGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCATCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTCAATAGTTTTGGAAGACATTTCTGCTTGCACTTTGAGGCGTTCCAGCTTGGCTCGGCTCCAGTGTATATGGCTTTTTTGCGATTCATGGGTGATGACAATGAAGCAAAGAAATTCAGCTACAGCTTGGAGGTTGGTGCAAATGGGCGCAAACTTATATGGCAAGGAATTCCAAGGAGCATTCGGGACAGTCATAGAAAAGTTCGAGATAGTCAAGATGGACTTATAATTCAGAGGAACCTAGCCCTTTATTTTTCTGGTGGAGAAAGACAAGAGTTGAAGTTGAGAATCACTGGTCGTATATGGAGAGAAGAATGA

>Glyma03g30250.3   sequence type=CDS   gene model=Glyma03g30250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCTGGAAGCAGTGTTTTCAAAGAAGTTCTTGAATCTCACCTGATGTCTTCAGATTATGAAATGGGAAAAGCTAAATCTGAGGCCAAGAGTAACAGTACATCTACAAAATCTAGCATTGGGTTGAGTGGAAAGAGTGGAATTAGTTCAAACAATGGCGTGTATGAATTACTTGGATGCCCCGTTTGCAAGAATTTGATGTATCCCCCAATTCACCAGTGCCCAAATGGCCATACATTATGTTCCCATTGTAAAGTTGAAGTCCATAATATCTGCCCGTCCTGCCATCATGATCTTGGGAATATAAGATGTTTGGCTTTGGAGAAAGTGGCAGAATCATTGGAGCTTCCTTGCAGATATCAGAGTCTTGGTTGCCATGATATATTCCCGTACTATACTAAGCTGAAGCATGAGCAAAATTGTGGATTTCGTCCATACAATTGCCCCTATGCTGGATCTGAGTGCTCTGTGATGGGTGATATTCCTACTCTTGTTGCCCATCTCAAGGATGATCACAAGGTTGACATGCATGATGGATGCACCTTCAATCATCGATATGTCAAAGCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTCAATAGTTTTGGAAGACATTTCTGCTTGCACTTTGAGGCGTTCCAGCTTGGCTCGGCTCCAGTGTATATGGCTTTTTTGCGATTCATGGGTGATGACAATGAAGCAAAGAAATTCAGCTACAGCTTGGAGGTTGGTGCAAATGGGCGCAAACTTATATGGCAAGGAATTCCAAGGAGCATTCGGGACAGTCATAGAAAAGTTCGAGATAGTCAAGATGGACTTATAATTCAGAGGAACCTAGCCCTTTATTTTTCTGGTGGAGAAAGACAAGAGTTGAAGTTGAGAATCACTGGTCGTATATGGAGAGAAGAATGA

Predicted protein sequences of Glyma03g30250

Limit To All Plant Sequences

>Glyma03g30250.1   sequence type=predicted peptide   gene model=Glyma03g30250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPGSSVFKEVLESHLMSSDYEMGKAKSEAKSNSTSTKSSIGLSGKSGISSNNGVYELLGCPVCKNLMYPPIHQCPNGHTLCSHCKVEVHNICPSCHHDLGNIRCLALEKVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDNEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWREE*

>Glyma03g30250.2   sequence type=predicted peptide   gene model=Glyma03g30250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPGSSVFKEVLESHLMSSDYEMGKAKSEAKSNSTSTKSSIGLSGKSGISSNNGVYELLGCPVCKNLMYPPIHQCPNGHTLCSHCKVEVHNICPSCHHDLGNIRCLALEKVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDNEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWREE*

>Glyma03g30250.3   sequence type=predicted peptide   gene model=Glyma03g30250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPGSSVFKEVLESHLMSSDYEMGKAKSEAKSNSTSTKSSIGLSGKSGISSNNGVYELLGCPVCKNLMYPPIHQCPNGHTLCSHCKVEVHNICPSCHHDLGNIRCLALEKVAESLELPCRYQSLGCHDIFPYYTKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKANPHEVENATWMLTVFNSFGRHFCLHFEAFQLGSAPVYMAFLRFMGDDNEAKKFSYSLEVGANGRKLIWQGIPRSIRDSHRKVRDSQDGLIIQRNLALYFSGGERQELKLRITGRIWREE*

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