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Report for Sequence Feature Glyma03g30100

Feature Type:gene_model
Chromosome:Gm03
Start:38059119
stop:38061195
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g30100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42110AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr2:17562234-17562732 REVERSE LENGTH=137 SoyBaseE_val: 7.00E-32ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR24580Panther FAMILY NOT NAMED JGI ISS
PTHR24580:SF18Panther JGI ISS
UniRef100_I1JNK7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNK7_SOYBN SoyBaseE_val: 3.00E-93ISS
UniRef100_Q9SNL4UniRef Annotation by Michelle Graham. Most informative UniRef hit: ESTs AU078251(R0889) n=1 Tax=Oryza sativa Japonica Group RepID=Q9SNL4_ORYSJ SoyBaseE_val: 5.00E-09ISS

Expression Patterns of Glyma03g30100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g30100 not represented in the dataset
Glyma03g30100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g30100
ParalogEvidenceComments
Glyma19g32970 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g30100 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g144700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g30100
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g30100
>Glyma03g30100.1   sequence type=CDS   gene model=Glyma03g30100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACTACAATTGTTATTGCTACTGCTGCTGAAGCTAATAAGGTTCAACATGTCACCAAGAAATCTTCTGATGAGCTTCTGAGGAAGTTCGCCGAAGCGGGTTCCGACGAGGCCGCCGGGGAAAACAAACGGAGGAAGAAGAAGAAGAGGGAAAGTGAATTGTGTGAGTGTGACAGCCCCTCTTCCAATGGTGGCGCCGCCATGGTGGAAAGGAGGTCCCTTCTGCTGCCGAAAGTGACGCGGAGGTCGGTGTTGCTCCGGCAGCTGAGGGTGAGGGATGTTAGAAACAAGTCATCACTCTTTGGAACCATTCATAAGACATGGCGTAGAACCGTGGAAGGTGCCTCCAGAGTTTTCTTGGAAAAACATTATCATCGCCATAAGCGTTTGATCAATGATATTGTTTAG
Predicted protein sequences of Glyma03g30100
>Glyma03g30100.1   sequence type=predicted peptide   gene model=Glyma03g30100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTTIVIATAAEANKVQHVTKKSSDELLRKFAEAGSDEAAGENKRRKKKKRESELCECDSPSSNGGAAMVERRSLLLPKVTRRSVLLRQLRVRDVRNKSSLFGTIHKTWRRTVEGASRVFLEKHYHRHKRLINDIV*






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