Glyma03g29940 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g29940

Feature Type:	gene_model
Chromosome:	Gm03
Start:	37954711
stop:	37958343
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g29940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06800	AT	Annotation by Michelle Graham. TAIR10: myb-like HTH transcriptional regulator family protein \| chr5:2103374-2105680 FORWARD LENGTH=375	SoyBase	E_val: 1.00E-61	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7KVC1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator ARR2 n=1 Tax=Medicago truncatula RepID=G7KVC1_MEDTR	SoyBase	E_val: 6.00E-138	ISS
UniRef100_I1JNJ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNJ7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g29940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29940

Paralog	Evidence	Comments
Glyma19g32850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g143600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g29940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g29940

Limit To All Plant Sequences

>Glyma03g29940.2   sequence type=transcript   gene model=Glyma03g29940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACCGTTTTCTATAATATCATATGTGTGACCCATCAAGCTTTGTTGTTGAAGTTGTCCTCCGTTGGGGACTTCTTTGAACCTCTTATTGACCCATCTAAGTTTGGTTGCTTAGTTTTCATCCTTTTTCTATTGATTCTTTTTGCATTTGGTTTAAATTCACGTGAAGACAACATTTAGACAAAACTTTTTGTTTGTTTCCATGTACTCTACTTCGTTAATGTCAATTCATTAATGTTCATTCTTATCCTTTTTTTCTTCTTCTCTAGAATAATTAATAGCTAATGACCTTGCACGGTAGCATTTAGACAATTAGATTCAAATCTTATACCTCAAGGCGTTTGGGAATACAAAAGAGAATTTTATGCCATAGGCTCGAATTGGCATTACTATTGTTACCTTTCCAATTTTCTTCTACCTTCCCCCTTCCATTTGGTGCTCCTTAATAAGGTTGAGCTTCCAAAGAGTTATTATGTTATGTATGATGCTACCTCACAATTTGTAGCACATACCTATTATAGTCTACTTACCATCCAACTTCAAATTTTGTGTCAATGAATGAGAACAAAATTGATTGGGGAGGATTGATTCAACAAAGTCATGTACTAAGTGGGGATTTTAATTCTGAGTTTGGCAATCGTTACTGTCAATATTTTGATATCAGACAAGCTTGGAATATGGGACCACTTGCCATGGTTGGAGGAGAAGCCATAGATAATGAGTTACAAAACATAGGCCATGCCAAATCATCTGGCACCATTATGAGCCGTTTTGAGTCACCAGCTTCTGCCTTTTATGCTGCAGAAAACTGCATGGAGTTTGCAGAATATGATTGCCAAGTTGGTATTCACTCTTTGAGCTCTCAGTTATGCAAGATTAATGATTTGGAGTTCCCCTTGTATCAATCTCCAAGGGAAAACCTTTTCTTGGATTCAGCAAACCAATCTGAAACCAACTTTGATTTATCAAACACTTTGCAATCCATAGTGAAATCTCAACTGAATAGTGCTAATCAATGCAGTAGATCCCCTGAAAAGTCCAATAAAATTTCATGTGGGAATTTTCACAGCACCAAGTTCCTTCCGGTTGAACAACAGAAGTTGTTCATTGATGGTCTTATCAGTGGCTCATCATTTCCTAACAAAGGAAATCAAGACCATATGCTGAGATTCTCTTCTCAGATTGAGAGGTTGTCTCCAACACTTTCAGCAGGAAGTGTGTCCACTATTGGAAACTCTGCTTCTAATGTGGCGGCCGTAGTGTCAAGTAAAACACGTATAAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGCGCTGAGCAGGCAACACCAAAAGCTATATTAAAGATGATGAACACTGATGGTTTGACTATCTTCCATGTCAAAAGTCATTTGCAGAAATATAGAATTGCTAAATTCATTCCAGAACCCAGTCACGGGAAATCTGACAAAAGAACCCACACAAAGGATGTGCATCATCTTGATGTCAAAACTGGCATACAAATTAGAGAGGCACTTAAGCTGCAATTAGATGCTCAAAGGTGTCTTCATGAACAACTAGAGATTCAGAGAAAATTACAGTTGCGAATCGAGGAACAAGGCAGGCAACTAAAGAAAATGTTCGACCAGCAACAGAAGACAAGTAATGACGTCTCTAATACTCAGAATTCAACCATTGAAGAGACATCAATTAGTCATAAAGACGGTGAAAATGCTTCCGAAGGGGCTAACAACAATTCCTTCTTCCCTTCCAAGACCTCTCCAAGCCAATAATTTGGTGGTTCATATGTGTATAAAATTACAGTTTTCCAAAAGCTTACTCCTTGTAAGATACAGATAGACCACATCATGTGATTTTGTTATGGGAAGAATAACATTGTTCTTTATACTACAGTCTACAAATGCAAACTCTATGAATTAGTACATAA

Coding sequences of Glyma03g29940

Limit To All Plant Sequences

>Glyma03g29940.1   sequence type=CDS   gene model=Glyma03g29940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGAGAACAAAATTGATTGGGGAGGATTGATTCAACAAAGTCATGTACTAAGTGGGGATTTTAATTCTGAGTTTGGCAATCGTTACTGTCAATATTTTGATATCAGACAAGCTTGGAATATGGGACCACTTGCCATGGTTGGAGGAGAAGCCATAGATAATGAGTTACAAAACATAGGCCATGCCAAATCATCTGGCACCATTATGAGCCGTTTTGAGTCACCAGCTTCTGCCTTTTATGCTGCAGAAAACTGCATGGAGTTTGCAGAATATGATTGCCAAGTTGGTATTCACTCTTTGAGCTCTCAGTTATGCAAGATTAATGATTTGGAGTTCCCCTTGTATCAATCTCCAAGGGAAAACCTTTTCTTGGATTCAGCAAACCAATCTGAAACCAACTTTGATTTATCAAACACTTTGCAATCCATAGTGAAATCTCAACTGAATAGTGCTAATCAATGCAGTAGATCCCCTGAAAAGTCCAATAAAATTTCATGTGGGAATTTTCACAGCACCAAGTTCCTTCCGGTTGAACAACAGAAGTTGTTCATTGATGGTCTTATCAGTGGCTCATCATTTCCTAACAAAGGAAATCAAGACCATATGCTGAGATTCTCTTCTCAGATTGAGAGGTTGTCTCCAACACTTTCAGCAGGAAGTGTGTCCACTATTGGAAACTCTGCTTCTAATGTGGCGGCCGTAGTGTCAAGTAAAACACGTATAAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGCGCTGAGCAGGCAACACCAAAAGCTATATTAAAGATGATGAACACTGATGGTTTGACTATCTTCCATGTCAAAAGTCATTTGCAGAAATATAGAATTGCTAAATTCATTCCAGAACCCAGTCACGGTTCATTCCCCATACTGAACCTAAAAAATTGTCCTGTTTCAGGGAAATCTGACAAAAGAACCCACACAAAGGATGTGCATCATCTTGATGTCAAAACTGGCATACAAATTAGAGAGGCACTTAAGCTGCAATTAGATGCTCAAAGGTGTCTTCATGAACAACTAGAGATTCAGAGAAAATTACAGTTGCGAATCGAGGAACAAGGCAGGCAACTAAAGAAAATGTTCGACCAGCAACAGAAGACAAGTAATGACGTCTCTAATACTCAGAATTCAACCATTGAAGAGACATCAATTAGTCATAAAGACGGTGAAAATGCTTCCGAAGGGGCTAACAACAATTCCTTCTTCCCTTCCAAGACCTCTCCAAGCCAATAA

>Glyma03g29940.2   sequence type=CDS   gene model=Glyma03g29940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGAGAACAAAATTGATTGGGGAGGATTGATTCAACAAAGTCATGTACTAAGTGGGGATTTTAATTCTGAGTTTGGCAATCGTTACTGTCAATATTTTGATATCAGACAAGCTTGGAATATGGGACCACTTGCCATGGTTGGAGGAGAAGCCATAGATAATGAGTTACAAAACATAGGCCATGCCAAATCATCTGGCACCATTATGAGCCGTTTTGAGTCACCAGCTTCTGCCTTTTATGCTGCAGAAAACTGCATGGAGTTTGCAGAATATGATTGCCAAGTTGGTATTCACTCTTTGAGCTCTCAGTTATGCAAGATTAATGATTTGGAGTTCCCCTTGTATCAATCTCCAAGGGAAAACCTTTTCTTGGATTCAGCAAACCAATCTGAAACCAACTTTGATTTATCAAACACTTTGCAATCCATAGTGAAATCTCAACTGAATAGTGCTAATCAATGCAGTAGATCCCCTGAAAAGTCCAATAAAATTTCATGTGGGAATTTTCACAGCACCAAGTTCCTTCCGGTTGAACAACAGAAGTTGTTCATTGATGGTCTTATCAGTGGCTCATCATTTCCTAACAAAGGAAATCAAGACCATATGCTGAGATTCTCTTCTCAGATTGAGAGGTTGTCTCCAACACTTTCAGCAGGAAGTGTGTCCACTATTGGAAACTCTGCTTCTAATGTGGCGGCCGTAGTGTCAAGTAAAACACGTATAAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTTGGAGGCGCTGAGCAGGCAACACCAAAAGCTATATTAAAGATGATGAACACTGATGGTTTGACTATCTTCCATGTCAAAAGTCATTTGCAGAAATATAGAATTGCTAAATTCATTCCAGAACCCAGTCACGGGAAATCTGACAAAAGAACCCACACAAAGGATGTGCATCATCTTGATGTCAAAACTGGCATACAAATTAGAGAGGCACTTAAGCTGCAATTAGATGCTCAAAGGTGTCTTCATGAACAACTAGAGATTCAGAGAAAATTACAGTTGCGAATCGAGGAACAAGGCAGGCAACTAAAGAAAATGTTCGACCAGCAACAGAAGACAAGTAATGACGTCTCTAATACTCAGAATTCAACCATTGAAGAGACATCAATTAGTCATAAAGACGGTGAAAATGCTTCCGAAGGGGCTAACAACAATTCCTTCTTCCCTTCCAAGACCTCTCCAAGCCAATAA

Predicted protein sequences of Glyma03g29940

Limit To All Plant Sequences

>Glyma03g29940.1   sequence type=predicted peptide   gene model=Glyma03g29940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNENKIDWGGLIQQSHVLSGDFNSEFGNRYCQYFDIRQAWNMGPLAMVGGEAIDNELQNIGHAKSSGTIMSRFESPASAFYAAENCMEFAEYDCQVGIHSLSSQLCKINDLEFPLYQSPRENLFLDSANQSETNFDLSNTLQSIVKSQLNSANQCSRSPEKSNKISCGNFHSTKFLPVEQQKLFIDGLISGSSFPNKGNQDHMLRFSSQIERLSPTLSAGSVSTIGNSASNVAAVVSSKTRIRWTKDLHEKFVECVNRLGGAEQATPKAILKMMNTDGLTIFHVKSHLQKYRIAKFIPEPSHGSFPILNLKNCPVSGKSDKRTHTKDVHHLDVKTGIQIREALKLQLDAQRCLHEQLEIQRKLQLRIEEQGRQLKKMFDQQQKTSNDVSNTQNSTIEETSISHKDGENASEGANNNSFFPSKTSPSQ*

>Glyma03g29940.2   sequence type=predicted peptide   gene model=Glyma03g29940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNENKIDWGGLIQQSHVLSGDFNSEFGNRYCQYFDIRQAWNMGPLAMVGGEAIDNELQNIGHAKSSGTIMSRFESPASAFYAAENCMEFAEYDCQVGIHSLSSQLCKINDLEFPLYQSPRENLFLDSANQSETNFDLSNTLQSIVKSQLNSANQCSRSPEKSNKISCGNFHSTKFLPVEQQKLFIDGLISGSSFPNKGNQDHMLRFSSQIERLSPTLSAGSVSTIGNSASNVAAVVSSKTRIRWTKDLHEKFVECVNRLGGAEQATPKAILKMMNTDGLTIFHVKSHLQKYRIAKFIPEPSHGKSDKRTHTKDVHHLDVKTGIQIREALKLQLDAQRCLHEQLEIQRKLQLRIEEQGRQLKKMFDQQQKTSNDVSNTQNSTIEETSISHKDGENASEGANNNSFFPSKTSPSQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain