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Report for Sequence Feature Glyma03g29901

Feature Type:gene_model
Chromosome:Gm03
Start:37904151
stop:37914523
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g29901
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42200AT Annotation by Michelle Graham. TAIR10: squamosa promoter binding protein-like 9 | chr2:17587601-17589451 FORWARD LENGTH=375 SoyBaseE_val: 3.00E-65ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0048366GO-bp Annotation by Michelle Graham. GO Biological Process: leaf development SoyBaseN/AISS
GO:0048653GO-bp Annotation by Michelle Graham. GO Biological Process: anther development SoyBaseN/AISS
GO:2000025GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of leaf formation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PF03110PFAM SBP domain JGI ISS
UniRef100_A2Q4T4UniRef Annotation by Michelle Graham. Most informative UniRef hit: SBP n=2 Tax=Medicago truncatula RepID=A2Q4T4_MEDTR SoyBaseE_val: 2.00E-143ISS
UniRef100_I1JNJ2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNJ2_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g29901
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g29901 not represented in the dataset
Glyma03g29901 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29901
ParalogEvidenceComments
Glyma19g32800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29901 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g143100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g29901
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g29901
>Glyma03g29901.1   sequence type=CDS   gene model=Glyma03g29901   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAGACGCAAAACTCTCATCTTCTGAGTCCCTCAACGGTTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTGGGTTTTGCTACTCCCGCTACCTCTCTTACTTCTTCTGCTACTACTGCTACCACTGTTACTTCTTCTTCTTCTTCCTCTTCAAGAAAAGGAAGAGGTGGTTCTGTTCAACCAGCTCAACCTCCAAGGTGTCAAGTTGAAGGGTGCGAAGTAGATCTGAGTAATGCAAAAACTTACTATTCTAGACACAAAGTTTGTGGCATGCACTCTAAATCCCCTACAGTCATTGTTGCTGGTCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGCGAATTGATTCTTGCAGCCCCCAGGTTTCATCAGCTTCCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAACGTCGGAGAAAGCCCCCACCCAGCTCCCTCTTGACCTCTCGCTATGCTAGACTTTCTTCATCTGCTTTTGATCATAGTGGCAGAGGTGGCAACTTTCTGATGGAATTGGCTTCATACCCAAAACTTAGTCTGAGAAATTCACTTCCAACTCCTAGGTCATCCGAGCTAGCGCCTGGAAATCAAACCTCCACCCTCAGCTGGCACGGGAACTCGGAGACATCATCTGACCTTTTCTTGCAAGGTTCGGTGGGTGGGACAAGCTTCGCCGGCCCGGGACATCCTCCAGGGGAAAGTTACACTGGGGTCACCACCTCGAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTAGAAACCCAGCACCAAGTCTTGGGTTGAATAACATGGTAAATTTCCACGGGACGCCCATGACACAGCCTGCTGCATCATCTCATGGTGCATCAATCCATCAACTTCCAAATACCCCGTGGTGTTTCAAGGGCATTGATTCTGGTAACTGTTCGCCCGAGGGGGTCCCTGATCTAGGTCTCGGTCAGATTTCGCAGCCTCTCAGTAGCCAACTTCACGGTGAGCTGGACCTGTCCCAACAAGGCAGGAGACATTATATGGATCTAGAACAGTCCAGGGCATATGAATCTGCTCATTGGTCACTTTAA
Predicted protein sequences of Glyma03g29901
>Glyma03g29901.1   sequence type=predicted peptide   gene model=Glyma03g29901   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASDAKLSSSESLNGLKFGQKIYFEDVGFATPATSLTSSATTATTVTSSSSSSSRKGRGGSVQPAQPPRCQVEGCEVDLSNAKTYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSSELILAAPRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSAFDHSGRGGNFLMELASYPKLSLRNSLPTPRSSELAPGNQTSTLSWHGNSETSSDLFLQGSVGGTSFAGPGHPPGESYTGVTTSSCALSLLSNQTWGSRNPAPSLGLNNMVNFHGTPMTQPAASSHGASIHQLPNTPWCFKGIDSGNCSPEGVPDLGLGQISQPLSSQLHGELDLSQQGRRHYMDLEQSRAYESAHWSL*






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