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Report for Sequence Feature Glyma03g29825

Feature Type:gene_model
Chromosome:Gm03
Start:37836490
stop:37843687
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g29825
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06839AT Annotation by Michelle Graham. TAIR10: bZIP transcription factor family protein | chr5:2120911-2126217 FORWARD LENGTH=460 SoyBaseE_val: 0ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009410GO-bp Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus SoyBaseN/AISS
GO:0030968GO-bp Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005096GO-mf Annotation by Michelle Graham. GO Molecular Function: GTPase activator activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR22952Panther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED JGI ISS
PTHR22952:SF54Panther BZIP FAMILY TRANSCRIPTION FACTOR JGI ISS
PF00170PFAM bZIP transcription factor JGI ISS
UniRef100_G7KUH8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Medicago truncatula RepID=G7KUH8_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233A018UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A018 related cluster n=1 Tax=unknown RepID=UPI000233A018 SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g29825
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g29825 not represented in the dataset
Glyma03g29825 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29825
ParalogEvidenceComments
Glyma19g32715 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29825 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g142400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g29825
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g29825
>Glyma03g29825.1   sequence type=CDS   gene model=Glyma03g29825   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCTTCTTCAAAGACCACCAACCCAATAACAACTACTACACAATTGGAACCACTCCCTCCACCTCAACACCGTCATCATCCTCATCATCTTCATCAGTTACAACAACAGCAACACCAACATCATTATCATCAACAAATTCATGACCATCAAATTTCTTTTGGACTGATGCAATCCTCTTCTTCATCTTCCTCTATCCCCGGAAACTACCTCGGAAGCAAGGATTCCGGGGCTTATGACTTGGGTGAATTGGATCAAGCCTTTTTCCTCTACCTTGATGGACAAGCTGACCCTTCTAGTGTTCAAGACCAAAGACAGAACTCATCATCAGGAATGAGGCCTCCGACTCTCAACATTTTCCCCTCTAAGCCTATGCACGTAGAGCCATCATCATCCAAGTCCAAGGCTAACATAGAGCTAGTTTCTCCACAAACAAGTGGATCAAAGAGACCATCAGAGCCGTCGATGGAGTTGGCTAACCCCCGAAACGAAACTGCTTCTGCCCCTCAACCACCCAAACCTGTCAAGCGAGAGGGCAATCGCAAAGGTCCAACGTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGACACTCAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGCAGGCTTAGGAAAAAGGCCTATGTTCAACAACTAGAGTCGAGTAGGATTAGGCTGAATCAGCTGGAACAAGAGCTACAACGTGCTAGAACTCAGGGCATGTTCTTGGGTGGAGGTGCACTCTTGGGTGGAGAGCAAGGACTTCCTGTCACTATGAATACCATTAGCACGGAGGCTGCAATGTTTGACGTAGAATATGCTAGATGGCAAGAGGAGAACCACCGCATAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCTGAGAACGAGCTTAGACTTTTTGTTGACAATTGTTTGGCGCATTATGACCAAGTGATGAACCTCAAGAGCTTAGTGGCCAAAACAGATGTGTTCCATCTTGTTTCTGGCATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATTGGTGGATTCAGGCCATCTGAACTCATTAAGATTATTGTGAGTCAAATTGAGCCTCTCACCGAGCAACAAATATTGGGCATATGTGGATTGCAACAATCTACACAAGAAGCAGAAGAGGCTCTCTCCCAAGGACTCGAGGCTCTCAATCAATCTCTCTCGGACACTATAACATCAGATTCTCTTAGTTATCCTCCCAATATGGCTAACTATATGGGACAGATGGCTGTGGCCATGAACAAACTCTCCACTCTTGAAGGTTTCGTGAGACAGGCTGATAATCTGCGGCACCAAACCATTCACCGTCTTCACCAGATTCTAACAACGCGTCAAGCAGCAAGGTGTTTTTTGGCCATAGCTGAGTACTTTCATCGTCTTCGAGCCCTCAGTTCATTGTGGTTGGCACGCCCTCGCCAAGAATAG
Predicted protein sequences of Glyma03g29825
>Glyma03g29825.1   sequence type=predicted peptide   gene model=Glyma03g29825   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMASSKTTNPITTTTQLEPLPPPQHRHHPHHLHQLQQQQHQHHYHQQIHDHQISFGLMQSSSSSSSIPGNYLGSKDSGAYDLGELDQAFFLYLDGQADPSSVQDQRQNSSSGMRPPTLNIFPSKPMHVEPSSSKSKANIELVSPQTSGSKRPSEPSMELANPRNETASAPQPPKPVKREGNRKGPTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRARTQGMFLGGGALLGGEQGLPVTMNTISTEAAMFDVEYARWQEENHRIVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFRPSELIKIIVSQIEPLTEQQILGICGLQQSTQEAEEALSQGLEALNQSLSDTITSDSLSYPPNMANYMGQMAVAMNKLSTLEGFVRQADNLRHQTIHRLHQILTTRQAARCFLAIAEYFHRLRALSSLWLARPRQE*






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