Glyma03g29701 - SoyBase

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Report for Sequence Feature Glyma03g29701

Feature Type:	gene_model
Chromosome:	Gm03
Start:	37741913
stop:	37743314
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g29701

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57790	AT	Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein \| chr3:21405387-21407088 REVERSE LENGTH=490	SoyBase	E_val: 2.00E-13	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0004650	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity	SoyBase	N/A	ISS
UniRef100_G7KUF1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase n=2 Tax=Medicago truncatula RepID=G7KUF1_MEDTR	SoyBase	E_val: 2.00E-21	ISS
UniRef100_I1N942	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N942_SOYBN	SoyBase	E_val: 6.00E-29	ISS

Expression Patterns of Glyma03g29701

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g29701 not represented in the dataset	Glyma03g29701 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29701

Paralog	Evidence	Comments
Glyma19g32550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29701 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g141000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g29701

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g29701

Limit To All Plant Sequences

>Glyma03g29701.1   sequence type=CDS   gene model=Glyma03g29701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATGGAGCACATTGAAGGGCTTGAGGTGAAAAAAGTTGAAATGAGATGGTCAAACAGTCAACTAGAGCAGTGGAATAATCCTCTAGAGTTTAGGCCATCTACTGTGAATAACATCTCTTTCCTTAATTTTAATTCTGGTTCGTATACAAATAGTAAATCAAGTTATAAACTTTGGGTCTGCAAAGGGAGAATGTCCAAATCTTTGGCTGCTTGCTTAACCATCAAGGGAACGGGGGAACAGTTCAAAAGAAGGGAGGAGCATTTGTTCTGCACTATAAAAAAATTAGAGAGAGAGAGATCAATTGTTAAATCTTGTTCTAGTGCTTCACTTTCTGCATCTGTAATATGA

Predicted protein sequences of Glyma03g29701

Limit To All Plant Sequences

>Glyma03g29701.1   sequence type=predicted peptide   gene model=Glyma03g29701   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMMEHIEGLEVKKVEMRWSNSQLEQWNNPLEFRPSTVNNISFLNFNSGSYTNSKSSYKLWVCKGRMSKSLAACLTIKGTGEQFKRREEHLFCTIKKLERERSIVKSCSSASLSASVI*

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