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Report for Sequence Feature Glyma03g29662

Feature Type:gene_model
Chromosome:Gm03
Start:37682303
stop:37684849
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g29662
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G51200AT Annotation by Michelle Graham. TAIR10: A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173 SoyBaseE_val: 2.00E-52ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0048573GO-bp Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG3173 KOG Predicted Zn-finger protein JGI ISS
PTHR10634Panther PRK1-ASSOCIATED ZINC FINGER PROTEIN JGI ISS
PF01428PFAM AN1-like Zinc finger JGI ISS
PF01754PFAM A20-like zinc finger JGI ISS
UniRef100_G7KUE5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger A20 and AN1 domain-containing stress-associated protein n=1 Tax=Medicago truncatula RepID=G7KUE5_MEDTR SoyBaseE_val: 2.00E-94ISS
UniRef100_I1JNG1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNG1_SOYBN SoyBaseE_val: 1.00E-122ISS

Expression Patterns of Glyma03g29662
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g29662 not represented in the dataset
Glyma03g29662 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29662
ParalogEvidenceComments
Glyma19g32500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29662 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g140500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g29662
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma03g29662
>Glyma03g29662.2   sequence type=transcript   gene model=Glyma03g29662   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAAAGAGAAATCGAGAGAAAGAGTGAGGAGAGAATTACAGAGCATTTTCCAACACGATTACACGACCGAATCAAACCCTCTCTTTCTCTCCGAAGCTGCGTTTAATATCTTACTCGCCTTAGATTGTTCTTCTCTTTCATTATACTGTTCTCTTTTCGATTTGAGGGAACAGTACAAGAGTGTGAGGATCGGTTAACCCAACTGCACAGGTAGTCACTAAAATAATGGAGTCTCACGATGAGACTGGATGCCAGGCTCCTGAACGCCCCATTCTTTGCATTAATAATTGTGGCTTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTGTTGAAGCAGGAGCAGGACAATTTTGCAGCATCGTCGGTTGAAAACATTGTGAATGGCAGTTCCAATGGCAATGGGGCTGTGACTACTGGTGCTGTTGATGTACAAGTTGAAGCTGTGGAGGTCAAGACTGTCTCTGCTCAGAGTTCTGTAGATTCATCCTCCGGTGAGAGTTTGGAGATGAAAGCCAAGAACAGTCCCAGTAGATGCGCTACATGCCGGAAACGTGTTGGGTTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGAATGCCCTTTTGATTATAGGACTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCGATAGTTAAGGCAGATAAGCTTGACAAAATCTAGGGATGCACTAGAATGAAGGTTGATGTATGAACCTTGAAGCTTCATCTTCTATATGTAAGTTTCATATATGTTGTCTTCCTGGGTTTTTAGGTGTCCTTTAGTGATTAAAATGATCCATGTCAAGATGGCAAGGGCATCATTAGGGAAAACATTTATTGTTTGCTGGGAGATCCACTATTAGCTCCAGTGTGTTTGTGCTGGTTTGATGAACACTTTGGCTCATTTTGTAATTTGATTGCCTGCTTGGTCTGCATTTTTTTTCCTTCCTCATTGCATTAATAGTATTTCCTGCTAGTCTTGTATTGATTTTGCTTTTGAATCGTCATAGTAATGTTCGATTTTTAATGCTCAAAATACA
Coding sequences of Glyma03g29662
>Glyma03g29662.1   sequence type=CDS   gene model=Glyma03g29662   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCTCACGATGAGACTGGATGCCAGGCTCCTGAACGCCCCATTCTTTGCATTAATAATTGTGGCTTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTGTTGAAGCAGGAGCAGGACAATTTTGCAGCATCGTCGGTTGAAAACATTGTGAATGGCAGTTCCAATGGCAATGGGGCTGTGACTACTGGTGCTGTTGATGTACAAGTTGAAGCTGTGGAGGTCAAGACTGTCTCTGCTCAGAGTTCTGTAGATTCATCCTCCGGTGAGAGTTTGGAGATGAAAGCCAAGAACAGTCCCAGTAGATGCGCTACATGCCGGAAACGTGTTGGGTTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGAATGCCCTTTTGATTATAGGACTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCGATAGTTAAGGCAGATAAGCTTGACAAAATCTAG

>Glyma03g29662.2   sequence type=CDS   gene model=Glyma03g29662   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCTCACGATGAGACTGGATGCCAGGCTCCTGAACGCCCCATTCTTTGCATTAATAATTGTGGCTTCTTTGGAAGAGCAGCTACCATGAACATGTGTTCCAAGTGTTACAAGGACATGCTGTTGAAGCAGGAGCAGGACAATTTTGCAGCATCGTCGGTTGAAAACATTGTGAATGGCAGTTCCAATGGCAATGGGGCTGTGACTACTGGTGCTGTTGATGTACAAGTTGAAGCTGTGGAGGTCAAGACTGTCTCTGCTCAGAGTTCTGTAGATTCATCCTCCGGTGAGAGTTTGGAGATGAAAGCCAAGAACAGTCCCAGTAGATGCGCTACATGCCGGAAACGTGTTGGGTTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGAATGCCCTTTTGATTATAGGACTGTTGGTCAGGATGCCATAGCTAAAGCCAACCCGATAGTTAAGGCAGATAAGCTTGACAAAATCTAG
Predicted protein sequences of Glyma03g29662
>Glyma03g29662.1   sequence type=predicted peptide   gene model=Glyma03g29662   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESHDETGCQAPERPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDNFAASSVENIVNGSSNGNGAVTTGAVDVQVEAVEVKTVSAQSSVDSSSGESLEMKAKNSPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHECPFDYRTVGQDAIAKANPIVKADKLDKI*

>Glyma03g29662.2   sequence type=predicted peptide   gene model=Glyma03g29662   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESHDETGCQAPERPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDNFAASSVENIVNGSSNGNGAVTTGAVDVQVEAVEVKTVSAQSSVDSSSGESLEMKAKNSPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHECPFDYRTVGQDAIAKANPIVKADKLDKI*






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