Glyma03g29600 - SoyBase

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Report for Sequence Feature Glyma03g29600

Feature Type:	gene_model
Chromosome:	Gm03
Start:	37602512
stop:	37609853
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g29600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57650	AT	Annotation by Michelle Graham. TAIR10: lysophosphatidyl acyltransferase 2 \| chr3:21349751-21352839 FORWARD LENGTH=389	SoyBase	E_val: 0	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003841	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1-acylglycerol-3-phosphate O-acyltransferase activity	SoyBase	N/A	ISS
GO:0016746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups	SoyBase	N/A	ISS
KOG1505	KOG	Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases	JGI		ISS
PTHR10983	Panther	1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE	JGI		ISS
PTHR10983:SF1	Panther	ACYL-COA:1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE	JGI		ISS
PF01553	PFAM	Acyltransferase	JGI		ISS
UniRef100_I1JNF5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JNF5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2Z1Y8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Prunus mume RepID=Q2Z1Y8_PRUMU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g29600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29600

Paralog	Evidence	Comments
Glyma19g32420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g139700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g29600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g29600

Limit To All Plant Sequences

>Glyma03g29600.2   sequence type=transcript   gene model=Glyma03g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACATGCAAATGGGAACTCTTTCTTCATTCTGCGTTCACTTACTCATCATATAACAACTAGACTTCAGTTTCCTACTGATGCACTGAACAGTATTTCCAAATCATGACTGCAAAATGATAAAAGAAACTAAGAAAGATCTTGAGTAGCTAGCTTTCATTACTAAGCATTTAGAATCTGTTTGGATACTAAGCTAGAAGTTCTTTTCAGAACTATATTTTCAGTAGAGAAGCTCTCAAAAGCACTTATGGCTTGTATCCAAACAAGTTAATCTCTTGATTTGTCGTCTCAGGCAATATGCTATGTCGTCGTAAGGCCGGTGTCGAAAAGTTTGTACAGAAGGATCAACCGGGTAGTAGCAGAGCTCTTGTGGCTGGAGCTTGTATGGCTTATTGATTGGTGGGCAGGAGTTAAGGTCCAAATATTCACAGATCATGAAACCTTTCGTTTAATGGGTAAAGAGCATGCACTTGTGATAAGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTCAGCTCAGCGTTCAGGTTGTCTTGGCAGCACTCTAGCTGTGATGAAGAAATCTTCAAAGTTTCTGCCGGTCATTGGCTGGTCAATGTGGTTTTCTGAGTATCTTTTTCTGGAGAGAAGTTGGGCCAAGGATGAAAGCACATTAAAGTCAGGCATCCAGCGACTGAGTGATTTCCCTCTTCCCTTTTGGCTAGCTCTCTTTGTAGAAGGAACGCGTTTTACACAGGCCAAACTATTAGCTGCTCAGGAATATGCCACTTCCACTGGATTGCCTGTTCCTAGAAATGTTTTGATTCCAAGAACTAAGGGTTTTGTTTCTGCAGTAAGTCATATGCGCTCATTTGTTCCTGCCATTTATGATGTAACAGTAGCCATCCCTAAGAGTTCCCCTGCTCCTACAATGCTAAGACTCTTCAAGGGACAACCTTCAGTGGTGCATGTTCATATCAAGAGGCATTTGATGAAGGAACTGCCAGATACAGATGAGGCTGTTGCTCAATGGTGTCGAGATATATTTGTGGCCAAGGATGCTTTGTTAGACAAACATATGGCTGAGGGTACTTTTAGTGATCAAGAGCTGCAGGATACTGGTCGACCAATAAAGTCTCTTCTGGTAGTTATATCTTGGGCGTGTCTGGTTGTTGCGGGGTCTGTAAAGTTCCTGCAATGGTCTTCGTTACTCTCTTCCTGGAAGGGTGTTGCATTTTCAGCTTTTGGTTTGGCAGTTGTTACTGCACTTATGCAAATTCTGATTCAATTCTCACAGTCAGAGCGTTCAAACCCGGCCAAGATCGTGCCTGCAAAGTCAAAAAACAAGGGGTCTTGATTTATTTGGCGAACTTAAAGTTGCATTTATGTGTGATGAGTGACTCATGTAATACTCATTATTTTGCTTTCAACATCTTATCATAGTATGCTTCTATTCTATATATGTACTATTATGAATGCTTATCGATTCATTGTTTTTAATTTAATTAGGATATCCTTTTGTATTGACAGTCTAGGGGATGGCCTAGAAAAATTCAACCACCTATTTTATTTTACTCTTGGCCATTCATGCCCTTGAGGTTTATTACTGGATAACCTACACGGATACCCACTAGGGGTCATCTTAATGATAGGAGGTTTGGGTGTTTTGACTAAGTCTTAGGTTCTAATTTTGTTGTTTCCATTATACACACTAAAAAAAACCCTACACAGGTTGTTATATATTATCCAATAAACATGAACTGTCTAGTTTTT

Coding sequences of Glyma03g29600

Limit To All Plant Sequences

>Glyma03g29600.1   sequence type=CDS   gene model=Glyma03g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATTGCAGCAGCGGCCGTGGTGGTACCATTGGGCCTGCTCTTCTTCGCCTCCGGCCTCCTTGTTAATCTCATTCAGGCAATATGCTATGTCGTCGTAAGGCCGGTGTCGAAAAGTTTGTACAGAAGGATCAACCGGGTAGTAGCAGAGCTCTTGTGGCTGGAGCTTGTATGGCTTATTGATTGGTGGGCAGGAGTTAAGGTCCAAATATTCACAGATCATGAAACCTTTCGTTTAATGGGTAAAGAGCATGCACTTGTGATAAGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTCAGCTCAGCGTTCAGGTTGTCTTGGCAGCACTCTAGCTGTGATGAAGAAATCTTCAAAGTTTCTGCCGGTCATTGGCTGGTCAATGTGGTTTTCTGAGTATCTTTTTCTGGAGAGAAGTTGGGCCAAGGATGAAAGCACATTAAAGTCAGGCATCCAGCGACTGAGTGATTTCCCTCTTCCCTTTTGGCTAGCTCTCTTTGTAGAAGGAACGCGTTTTACACAGGCCAAACTATTAGCTGCTCAGGAATATGCCACTTCCACTGGATTGCCTGTTCCTAGAAATGTTTTGATTCCAAGAACTAAGGGTTTTGTTTCTGCAGTAAGTCATATGCGCTCATTTGTTCCTGCCATTTATGATGTAACAGTAGCCATCCCTAAGAGTTCCCCTGCTCCTACAATGCTAAGACTCTTCAAGGGACAACCTTCAGTGGTGCATGTTCATATCAAGAGGCATTTGATGAAGGAACTGCCAGATACAGATGAGGCTGTTGCTCAATGGTGTCGAGATATATTTGTGGCCAAGGATGCTTTGTTAGACAAACATATGGCTGAGGGTACTTTTAGTGATCAAGAGCTGCAGGATACTGGTCGACCAATAAAGTCTCTTCTGGTAGTTATATCTTGGGCGTGTCTGGTTGTTGCGGGGTCTGTAAAGTTCCTGCAATGGTCTTCGTTACTCTCTTCCTGGAAGGGTGTTGCATTTTCAGCTTTTGGTTTGGCAGTTGTTACTGCACTTATGCAAATTCTGATTCAATTCTCACAGTCAGAGCGTTCAAACCCGGCCAAGATCGTGCCTGCAAAGTCAAAAAACAAGGGGTCTTGA

>Glyma03g29600.2   sequence type=CDS   gene model=Glyma03g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAAAGAGCATGCACTTGTGATAAGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGGTTTCAGCTCAGCGTTCAGGTTGTCTTGGCAGCACTCTAGCTGTGATGAAGAAATCTTCAAAGTTTCTGCCGGTCATTGGCTGGTCAATGTGGTTTTCTGAGTATCTTTTTCTGGAGAGAAGTTGGGCCAAGGATGAAAGCACATTAAAGTCAGGCATCCAGCGACTGAGTGATTTCCCTCTTCCCTTTTGGCTAGCTCTCTTTGTAGAAGGAACGCGTTTTACACAGGCCAAACTATTAGCTGCTCAGGAATATGCCACTTCCACTGGATTGCCTGTTCCTAGAAATGTTTTGATTCCAAGAACTAAGGGTTTTGTTTCTGCAGTAAGTCATATGCGCTCATTTGTTCCTGCCATTTATGATGTAACAGTAGCCATCCCTAAGAGTTCCCCTGCTCCTACAATGCTAAGACTCTTCAAGGGACAACCTTCAGTGGTGCATGTTCATATCAAGAGGCATTTGATGAAGGAACTGCCAGATACAGATGAGGCTGTTGCTCAATGGTGTCGAGATATATTTGTGGCCAAGGATGCTTTGTTAGACAAACATATGGCTGAGGGTACTTTTAGTGATCAAGAGCTGCAGGATACTGGTCGACCAATAAAGTCTCTTCTGGTAGTTATATCTTGGGCGTGTCTGGTTGTTGCGGGGTCTGTAAAGTTCCTGCAATGGTCTTCGTTACTCTCTTCCTGGAAGGGTGTTGCATTTTCAGCTTTTGGTTTGGCAGTTGTTACTGCACTTATGCAAATTCTGATTCAATTCTCACAGTCAGAGCGTTCAAACCCGGCCAAGATCGTGCCTGCAAAGTCAAAAAACAAGGGGTCTTGA

Predicted protein sequences of Glyma03g29600

Limit To All Plant Sequences

>Glyma03g29600.1   sequence type=predicted peptide   gene model=Glyma03g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIAAAAVVVPLGLLFFASGLLVNLIQAICYVVVRPVSKSLYRRINRVVAELLWLELVWLIDWWAGVKVQIFTDHETFRLMGKEHALVISNHRSDIDWLVGWVSAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERSWAKDESTLKSGIQRLSDFPLPFWLALFVEGTRFTQAKLLAAQEYATSTGLPVPRNVLIPRTKGFVSAVSHMRSFVPAIYDVTVAIPKSSPAPTMLRLFKGQPSVVHVHIKRHLMKELPDTDEAVAQWCRDIFVAKDALLDKHMAEGTFSDQELQDTGRPIKSLLVVISWACLVVAGSVKFLQWSSLLSSWKGVAFSAFGLAVVTALMQILIQFSQSERSNPAKIVPAKSKNKGS*

>Glyma03g29600.2   sequence type=predicted peptide   gene model=Glyma03g29600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGKEHALVISNHRSDIDWLVGWVSAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERSWAKDESTLKSGIQRLSDFPLPFWLALFVEGTRFTQAKLLAAQEYATSTGLPVPRNVLIPRTKGFVSAVSHMRSFVPAIYDVTVAIPKSSPAPTMLRLFKGQPSVVHVHIKRHLMKELPDTDEAVAQWCRDIFVAKDALLDKHMAEGTFSDQELQDTGRPIKSLLVVISWACLVVAGSVKFLQWSSLLSSWKGVAFSAFGLAVVTALMQILIQFSQSERSNPAKIVPAKSKNKGS*

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