Report for Sequence Feature Glyma03g29550
Feature Type: gene_model
Chromosome: Gm03
Start: 37558198
stop: 37562775
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g29550
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G26590 AT
Annotation by Michelle Graham. TAIR10: oligopeptide transporter 5 | chr4:13414134-13416850 REVERSE LENGTH=753
SoyBase E_val: 0 ISS
GO:0006857 GO-bp
Annotation by Michelle Graham. GO Biological Process: oligopeptide transport
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
KOG2262
KOG
Sexual differentiation process protein ISP4
JGI ISS
PTHR22601 Panther
ISP4 LIKE PROTEIN
JGI ISS
PF03169 PFAM
OPT oligopeptide transporter protein
JGI ISS
UniRef100_G7KTL2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Oligopeptide transporter OPT family n=1 Tax=Medicago truncatula RepID=G7KTL2_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002337AAD UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002337AAD related cluster n=1 Tax=unknown RepID=UPI0002337AAD
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g29550
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma03g29550
Paralog Evidence Comments
Glyma19g32401 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g29550 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g139100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g29550
Coding sequences of Glyma03g29550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g29550.1 sequence type=CDS gene model=Glyma03g29550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGAGAGGAGCCAATAATAAGAAATTATCACCTCTCTCTTCGGAGCAATTCATTTCTCTTACCACCCCGCTTGTTGATTTGGAAAAGGAAGCTGAGGCATCAAGCACAGGAGTGTCTCAAGAGAGGGTCATAGAGGATGCTGAGAAAGATGAATTTCAAGTTGATGACTGTCCCATAGAGCAAGTGAGGCTAACAGTTCCAATCACTGATGATCCTACTCAGCCAGCACTGACATTCCGGACATGGGTTCTGGGGTTGGCATCATGTGTATTTCTTGCCTTTGTAAACCAATTCTTTGGCTACAGAACCAACCCTTTAAAAATCTCTTCGGTCTCAGCGCAGATTATTACCCTCCCACTTGGGAAACTCATGGCTGCAACTCTTTCCACTAAACCAATCCGAGTGCCATTCACAAAATGGTCTTTTTCATTGAATCCGGGCCCATTCTCTTTGAAGGAACATGTGCTGATCACCATCTTTGCTACATCTGGATCTAGTGGTGTTTATGCAATTAGCATCATCACAATTGTTAAGGCTTTCTATCATAGGAACATCCATCCAGTAGCGGCTTATTTATTAGCACTATCAACCCAAATGCTTGGGTATGGATGGGCTGGGATTTTTAGAAGATTTCTTGTTAACTCCCCTTATATGTGGTGGCCTGCAAACCTTGTGCAGGTGTCTCTATTCAGGGCATTTCATGAAAAAGAAAAAAGGCCTAAAGGAGGAAACACTAGGCTCCAATTCTTTTTTCTAGTTTTTGTAGTGAGCTTTGCCTATTACACTATACCAGGGTACTTATTCCAAGCAATATCAACTATCTCCTTTGTTTGCTTGATTTGGAAAGATTCTATCACTGCTCAACAGATTGGTTCAGGCATGAATGGCCTTGGCATCGGCTCGTTTGGCCTCGATTGGAACACCGTTGCAGGCTTTTTAGGCAGCCCTTTAGCTATACCTGGCTTTGCCATCATCAACATGTTGATTGGATTTGTGCTGGATATCTATGTTTTGATTCCCCTTGCTTATTGGAGCAATTTATATGATGCTAAAAAGTTTCCCCTCATTAGTTCTCACACATTTGACTCAACAGGTGCAACATATAATGTTAGTAGGATTCTAAATCCCAAAACTTTTGACATTGATTTGAATAGTTATAACAATTACAGCAAGATCTATCTTAGTATCACTTTTGCATTTGAGTATGGATTTAGCTTTGCAACTCTGACTGCCACTATTTCACACGTTGCCCTCTTCCATGGAGAGATGATTCTTCAGATGTGGAGGAAGACAACTAGAGCACTAAAAGAACAACTTGGAGATGTCCATACAAGAATTATGAAGAGAAACTATGAACAAGTCCCTGAATGGTGGTTTGTCACCATTTTGATTCTCATGGTTGTTATTGCCTTGGTTGCTTGTGAAGGCTTTGGCAAACAACTCCAACTTCCATGGTGGGGAATTTTACTTTCTTTAACAATTGCATTAGTCTTCACCTTGCCAATTGGGGTTATTCAAGCCACAACAAACATACAGACAGGACTCAACGTGATTGCGGAGTTGATAATTGGATTCATTTACCCAGGAAAGCCACTTGCTAACGTGGCCTTCAAGACTTATGGACATGTCAGCATGGTACAGGCACTTGGGTTTCTTGGTGACTTCAAATTAGGCCACTATATGAAAATTCCTCCTAAATCTATGTTCATAGTGCAGCTGGTAGGCACAGTTGTTGCTTCATCTGTCTACTTTGCCACAGCTTGGTGGCTTCTCACATCTATTGAGAACATTTGTGATGAAGAATTGTTGCCGAAGGGTAGTCCATGGACATGCCCTGGTGATGATGTGTTCTATAATGCTTCAATAATATGGGGAGTAGTAGGACCAAAGAGAATGTTTACCAAGGATGGTGTTTATCCAGGGATGAATTGGTTTTTCCTCATTGGTCTACTTGCACCCCTTCCTGTGTGGTTGCTTTCTAAAAAATTCCCCAACCACAAGTGGATTCAACTCATCAACTTTCCCATCATCATTGCAGGTGCATCCAATATCCCACCATTCAGATCTGTTAATTATATTACATGGGGAATTGTTGGAATCTTCTTTAATTTCTATGTTTATAGAAAGTTCAAGGCATGGTGGGCTAGGCATACTTATATCCTTTCAGCTGCTTTAGATGCCGGAGTTGCTTTCATGGGTGTAGCCCTCTATTTTGCTCTCCAATCCAATGGTATTTTTGGTCCAACCTGGTGGGGTCTTGATGCTGATCACTGCCATTTGGCCAAATGCCCCACAGCTCCAGATGTACATGCCAAAGGATGCCCTCTTCTCTGA
Predicted protein sequences of Glyma03g29550
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g29550.1 sequence type=predicted peptide gene model=Glyma03g29550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MERGANNKKLSPLSSEQFISLTTPLVDLEKEAEASSTGVSQERVIEDAEKDEFQVDDCPIEQVRLTVPITDDPTQPALTFRTWVLGLASCVFLAFVNQFFGYRTNPLKISSVSAQIITLPLGKLMAATLSTKPIRVPFTKWSFSLNPGPFSLKEHVLITIFATSGSSGVYAISIITIVKAFYHRNIHPVAAYLLALSTQMLGYGWAGIFRRFLVNSPYMWWPANLVQVSLFRAFHEKEKRPKGGNTRLQFFFLVFVVSFAYYTIPGYLFQAISTISFVCLIWKDSITAQQIGSGMNGLGIGSFGLDWNTVAGFLGSPLAIPGFAIINMLIGFVLDIYVLIPLAYWSNLYDAKKFPLISSHTFDSTGATYNVSRILNPKTFDIDLNSYNNYSKIYLSITFAFEYGFSFATLTATISHVALFHGEMILQMWRKTTRALKEQLGDVHTRIMKRNYEQVPEWWFVTILILMVVIALVACEGFGKQLQLPWWGILLSLTIALVFTLPIGVIQATTNIQTGLNVIAELIIGFIYPGKPLANVAFKTYGHVSMVQALGFLGDFKLGHYMKIPPKSMFIVQLVGTVVASSVYFATAWWLLTSIENICDEELLPKGSPWTCPGDDVFYNASIIWGVVGPKRMFTKDGVYPGMNWFFLIGLLAPLPVWLLSKKFPNHKWIQLINFPIIIAGASNIPPFRSVNYITWGIVGIFFNFYVYRKFKAWWARHTYILSAALDAGVAFMGVALYFALQSNGIFGPTWWGLDADHCHLAKCPTAPDVHAKGCPLL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
