Glyma03g29540 - SoyBase

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Report for Sequence Feature Glyma03g29540

Feature Type:	gene_model
Chromosome:	Gm03
Start:	37549655
stop:	37556355
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g29540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G03270	AT	Annotation by Michelle Graham. TAIR10: DNA-binding protein, putative \| chr2:994071-995990 FORWARD LENGTH=639	SoyBase	E_val: 0	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG1803	KOG	DNA helicase	JGI		ISS
PTHR10887	Panther	DNA2/NAM7 HELICASE FAMILY	JGI		ISS
PTHR10887:SF140	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF04851	PFAM	Type III restriction enzyme, res subunit	JGI		ISS
UniRef100_G7KTL0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-binding protein SMUBP-2 n=1 Tax=Medicago truncatula RepID=G7KTL0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JNF0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNF0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g29540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29540

Paralog	Evidence	Comments
Glyma19g32390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g139000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g29540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g29540

Limit To All Plant Sequences

>Glyma03g29540.2   sequence type=transcript   gene model=Glyma03g29540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGTATTGCCAGTGCTTACAGTAACGTTGGGCGCAGCTGGTGTCTCTCTCATCTCATCGATAGATAGCACTTAACGGTGACAGTGAGTGCGAGAATGGCAACGGGAACGGGAAGTAAGAAGAAGGCATCGCCTCTCTCTTTGGAGCAATTCATCTCCATTACCGCTCCTCTTCTTGACTTGGAAAAGGAAGCTGAGATTTCAAGCTCGATCGCCACTGGTGCGTCCAGGAATTTGGATACTGCTCAAAAGAGGGGTTCTACAATCCTCAACTTGAAGTGCGTCGATGTCCAGACAGGGCTTATGGGGAAGTCTCTGATCGAGTTCCAGTCAACAAAAGGAGATGTTCTTCCTGCACACAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTACAGGTTAAAGGACTCATCAATAACCATTGCTTTTGATGATATACCGGAAGACGGTTTAAACAGTCCCCTAAGACTGGAAAAAGTAGCAAATGAGGTGACTTATCGCAGGATGAAAGACGCGTTGATACAGTTGAGTAAAGGAGTGCACAAGGGTCCTGCCTCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCCACCAACAGTGTCCAAGAAGGATGTATCTTCCACTCCCTTTAATAAAAATCTTGATCACTCCCAGAAAGAAGCAGTTTCAAAAGCTCTATCATCGAAGAATGTGTTCTTGTTGCATGGACCACCTGGAACGGGAAAAACTACAACAGTTGTAGAAATTATATTACAAGAAGTGAAACGTGGATCTAAGATTCTTGCTTGTGCTGCCTCAAATATTGCTGTGGACAACATTGTTGAGCGGCTAGTTCCACATAGGTGTGTAAAATCATTTGTTGATACTTTATACTCATTCATGATGACGTTTTCTGCTAGAGTTAAGCTGGTGAGAGTGGGTCATCCTGCACGTTTATTGCCTCAAGTATTGGACAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAGCTGCTGAAAACCAAAGACAGAAATACTAGAAAGGACATACAAAGGGAACTTAGGACTCTATCCAAAGAAGAACGTAAAAGGCAGCAGCTTGCTGTAACAGATGTACTTAAAAGTGCAGATGTAATATTAACTACTTTGATTGGGGCTTTCTCTAAAAAACTAGACAGCACTTCATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTATACTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCCGAGAAGAAAGGCTTAGGAAGAACGCTCTTTGAACGACTTGCAGAAATGTATGGAGATGAAATCACATCAATGCTTACAATCCAGTATCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGATCAAGGCTCATCCAAGTGTTACTGCGCATATGTTATATGATCTTGAGGGTGTGAAGCGGACAAATTCTACTGAACCAACCCTCCTTCTCATAGACACAGCTGGATGTGACATGGAAGAAAAGAAAGATGAAGAAGATAGCACCTTTAATGAAGGTGAAGCTGAGGTTACCGTGACTCACGCAAAGAGACTAGTGCAAAGTGGGGTGCTTCCTTCTGATATTGGAATTATTACTCCGTATGCTGCACAGGTTGTTTTACTCAAGATGTTGAAAAACAAGGAGGACCAGCTGAAGGATGTTGAAATCTCAACAGTTGATGGATTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAAGAGGTTGGCTTTCTGAGTGATCGCCGGCGAATGAATGTGGCTGTGACACGGTCCAGAAGGCAATGCTGTCTTGTCTGTGACACAGAGACAGTCAGTGGTGACGGATTTCTAAAGCGATTGATTGAGTATTTTGAGGAGCATGGTGAATATCTAAGTGCATCTGAGTACCAGAATGAGTAGGCCAGATTCACAGGGTTAAGATTTCTATTGTCGCACTCTCATGTGATCAATTTGTTGATTTTGGTGATGTTGCTAGTAGATCTGTGTAGGTTTCTCAAATCTTTCCTGAGCTATTTGGAATGGAAAAAGGTTGATAGTTTTTATAGAACCATTTTATGTAGAAGAAAAAAATTCTTGGTATCTACTAATGTTATTACTTTGATTTTGTTAAGAAACAATATTACTTTCAGAATAATGTGGACTTGGAGTAGTCCCTTCTATTTACGTAATCTTTTTCATATGTAGTATATGATACTTGTAAATTGTAACCATGCCAGTTTTAATTTAAAATACTTCTTCTAAACTTCTATTATCAAGGGAATAGATTG

Coding sequences of Glyma03g29540

Limit To All Plant Sequences

>Glyma03g29540.1   sequence type=CDS   gene model=Glyma03g29540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACGGGAACGGGAAGTAAGAAGAAGGCATCGCCTCTCTCTTTGGAGCAATTCATCTCCATTACCGCTCCTCTTCTTGACTTGGAAAAGGAAGCTGAGATTTCAAGCTCGATCGCCACTGGTGCGTCCAGGAATTTGGATACTGCTCAAAAGAGGGGTTCTACAATCCTCAACTTGAAGTGCGTCGATGTCCAGACAGGGCTTATGGGGAAGTCTCTGATCGAGTTCCAGTCAACAAAAGGAGATGTTCTTCCTGCACACAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTACAGGTTAAAGGACTCATCAATAACCATTGCTTTTGATGATATACCGGAAGACGGTTTAAACAGTCCCCTAAGACTGGAAAAAGTAGCAAATGAGGTGACTTATCGCAGGATGAAAGACGCGTTGATACAGTTGAGTAAAGGAGTGCACAAGGGTCCTGCCTCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCCACCAACAGTGTCCAAGAAGGATGTATCTTCCACTCCCTTTAATAAAAATCTTGATCACTCCCAGAAAGAAGCAGTTTCAAAAGCTCTATCATCGAAGAATGTGTTCTTGTTGCATGGACCACCTGGAACGGGAAAAACTACAACAGTTGTAGAAATTATATTACAAGAAGTGAAACGTGGATCTAAGATTCTTGCTTGTGCTGCCTCAAATATTGCTGTGGACAACATTGTTGAGCGGCTAGTTCCACATAGAGTTAAGCTGGTGAGAGTGGGTCATCCTGCACGTTTATTGCCTCAAGTATTGGACAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAGCTGCTGAAAACCAAAGACAGAAATACTAGAAAGGACATACAAAGGGAACTTAGGACTCTATCCAAAGAAGAACGTAAAAGGCAGCAGCTTGCTGTAACAGATGTACTTAAAAGTGCAGATGTAATATTAACTACTTTGATTGGGGCTTTCTCTAAAAAACTAGACAGCACTTCATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTATACTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCCGAGAAGAAAGGCTTAGGAAGAACGCTCTTTGAACGACTTGCAGAAATGTATGGAGATGAAATCACATCAATGCTTACAATCCAGTATCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGATCAAGGCTCATCCAAGTGTTACTGCGCATATGTTATATGATCTTGAGGGTGTGAAGCGGACAAATTCTACTGAACCAACCCTCCTTCTCATAGACACAGCTGGATGTGACATGGAAGAAAAGAAAGATGAAGAAGATAGCACCTTTAATGAAGGTGAAGCTGAGGTTACCGTGACTCACGCAAAGAGACTAGTGCAAAGTGGGGTGCTTCCTTCTGATATTGGAATTATTACTCCGTATGCTGCACAGGTTGTTTTACTCAAGATGTTGAAAAACAAGGAGGACCAGCTGAAGGATGTTGAAATCTCAACAGTTGATGGATTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAAGAGGTTGGCTTTCTGAGTGATCGCCGGCGAATGAATGTGGCTGTGACACGGTCCAGAAGGCAATGCTGTCTTGTCTGTGACACAGAGACAGTCAGTGGTGACGGATTTCTAAAGCGATTGATTGAGTATTTTGAGGAGCATGGTGAATATCTAAGTGCATCTGAGTACCAGAATGAGTAG

>Glyma03g29540.2   sequence type=CDS   gene model=Glyma03g29540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACGGGAACGGGAAGTAAGAAGAAGGCATCGCCTCTCTCTTTGGAGCAATTCATCTCCATTACCGCTCCTCTTCTTGACTTGGAAAAGGAAGCTGAGATTTCAAGCTCGATCGCCACTGGTGCGTCCAGGAATTTGGATACTGCTCAAAAGAGGGGTTCTACAATCCTCAACTTGAAGTGCGTCGATGTCCAGACAGGGCTTATGGGGAAGTCTCTGATCGAGTTCCAGTCAACAAAAGGAGATGTTCTTCCTGCACACAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTACAGGTTAAAGGACTCATCAATAACCATTGCTTTTGATGATATACCGGAAGACGGTTTAAACAGTCCCCTAAGACTGGAAAAAGTAGCAAATGAGGTGACTTATCGCAGGATGAAAGACGCGTTGATACAGTTGAGTAAAGGAGTGCACAAGGGTCCTGCCTCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCCACCAACAGTGTCCAAGAAGGATGTATCTTCCACTCCCTTTAATAAAAATCTTGATCACTCCCAGAAAGAAGCAGTTTCAAAAGCTCTATCATCGAAGAATGTGTTCTTGTTGCATGGACCACCTGGAACGGGAAAAACTACAACAGTTGTAGAAATTATATTACAAGAAGTGAAACGTGGATCTAAGATTCTTGCTTGTGCTGCCTCAAATATTGCTGTGGACAACATTGTTGAGCGGCTAGTTCCACATAGGTGTGTAAAATCATTTGTTGATACTTTATACTCATTCATGATGACGTTTTCTGCTAGAGTTAAGCTGGTGAGAGTGGGTCATCCTGCACGTTTATTGCCTCAAGTATTGGACAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAGCTGCTGAAAACCAAAGACAGAAATACTAGAAAGGACATACAAAGGGAACTTAGGACTCTATCCAAAGAAGAACGTAAAAGGCAGCAGCTTGCTGTAACAGATGTACTTAAAAGTGCAGATGTAATATTAACTACTTTGATTGGGGCTTTCTCTAAAAAACTAGACAGCACTTCATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTATACTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCCGAGAAGAAAGGCTTAGGAAGAACGCTCTTTGAACGACTTGCAGAAATGTATGGAGATGAAATCACATCAATGCTTACAATCCAGTATCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGATCAAGGCTCATCCAAGTGTTACTGCGCATATGTTATATGATCTTGAGGGTGTGAAGCGGACAAATTCTACTGAACCAACCCTCCTTCTCATAGACACAGCTGGATGTGACATGGAAGAAAAGAAAGATGAAGAAGATAGCACCTTTAATGAAGGTGAAGCTGAGGTTACCGTGACTCACGCAAAGAGACTAGTGCAAAGTGGGGTGCTTCCTTCTGATATTGGAATTATTACTCCGTATGCTGCACAGGTTGTTTTACTCAAGATGTTGAAAAACAAGGAGGACCAGCTGAAGGATGTTGAAATCTCAACAGTTGATGGATTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAAGAGGTTGGCTTTCTGAGTGATCGCCGGCGAATGAATGTGGCTGTGACACGGTCCAGAAGGCAATGCTGTCTTGTCTGTGACACAGAGACAGTCAGTGGTGACGGATTTCTAAAGCGATTGATTGAGTATTTTGAGGAGCATGGTGAATATCTAAGTGCATCTGAGTACCAGAATGAGTAG

Predicted protein sequences of Glyma03g29540

Limit To All Plant Sequences

>Glyma03g29540.1   sequence type=predicted peptide   gene model=Glyma03g29540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATGTGSKKKASPLSLEQFISITAPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITIAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPASDLIPVLFGERPPTVSKKDVSSTPFNKNLDHSQKEAVSKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRVGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRKDIQRELRTLSKEERKRQQLAVTDVLKSADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPILKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEITSMLTIQYRMHELIMDWSSKELYNSKIKAHPSVTAHMLYDLEGVKRTNSTEPTLLLIDTAGCDMEEKKDEEDSTFNEGEAEVTVTHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEDQLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRSRRQCCLVCDTETVSGDGFLKRLIEYFEEHGEYLSASEYQNE*

>Glyma03g29540.2   sequence type=predicted peptide   gene model=Glyma03g29540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATGTGSKKKASPLSLEQFISITAPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIEFQSTKGDVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITIAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHKGPASDLIPVLFGERPPTVSKKDVSSTPFNKNLDHSQKEAVSKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRCVKSFVDTLYSFMMTFSARVKLVRVGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRKDIQRELRTLSKEERKRQQLAVTDVLKSADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPILKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEITSMLTIQYRMHELIMDWSSKELYNSKIKAHPSVTAHMLYDLEGVKRTNSTEPTLLLIDTAGCDMEEKKDEEDSTFNEGEAEVTVTHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEDQLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRSRRQCCLVCDTETVSGDGFLKRLIEYFEEHGEYLSASEYQNE*

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