Glyma03g29480 - SoyBase

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Report for Sequence Feature Glyma03g29480

Feature Type:	gene_model
Chromosome:	Gm03
Start:	37507254
stop:	37508239
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g29480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G20898	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:7323796-7324203 FORWARD LENGTH=108	SoyBase	E_val: 5.00E-16	ISS
UniRef100_I1JNE5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNE5_SOYBN	SoyBase	E_val: 6.00E-56	ISS

Expression Patterns of Glyma03g29480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29480

Paralog	Evidence	Comments
Glyma19g32300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g138300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g29480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g29480

Limit To All Plant Sequences

>Glyma03g29480.2   sequence type=CDS   gene model=Glyma03g29480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCAACCTCTACTTCAAGAACTCGAATCAAGTGGCAAAAGCTTGAGGAAACAAAGCAGCAAAGATCAATGACAAGACCATGCGAGCATGCTACTAATTCCTCAAGCTCCCAAGAACGAGGTATTGGGAATGTTGAGGAAGATAGTATCAATGAAGAAGATGTTTGTTCAAGTGGTTGTGCTACACCAAAGGCTAAAAGGTTCAGAATACCAGAGGTGCTAACATGTCCACCAGCTCCTAAGAAGAGAAGGGTAATGCCCAATTACTCATCAAAAAAATCCCCAATAGCATTTTTCGCTTCACCAGATATAGAGTTCTTCTTCTTCTCATCATCACTCAGAAATGTTTCAGCTTGA

Predicted protein sequences of Glyma03g29480

Limit To All Plant Sequences

>Glyma03g29480.2   sequence type=predicted peptide   gene model=Glyma03g29480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTSTSRTRIKWQKLEETKQQRSMTRPCEHATNSSSSQERGIGNVEEDSINEEDVCSSGCATPKAKRFRIPEVLTCPPAPKKRRVMPNYSSKKSPIAFFASPDIEFFFFSSSLRNVSA*

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