Glyma03g29460 - SoyBase

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Report for Sequence Feature Glyma03g29460

Feature Type:	gene_model
Chromosome:	Gm03
Start:	37471366
stop:	37485651
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g29460

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41870	AT	Annotation by Michelle Graham. TAIR10: Remorin family protein \| chr2:17471119-17472519 REVERSE LENGTH=274	SoyBase	E_val: 2.00E-36	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF03763	PFAM	Remorin, C-terminal region	JGI		ISS
UniRef100_E6NUF4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: JMS10C05.9 protein n=1 Tax=Jatropha curcas RepID=E6NUF4_9ROSI	SoyBase	E_val: 2.00E-57	ISS
UniRef100_I1JNE1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1JNE1_SOYBN	SoyBase	E_val: 2.00E-134	ISS

Expression Patterns of Glyma03g29460

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g29460 not represented in the dataset	Glyma03g29460 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29460

Paralog	Evidence	Comments
Glyma19g32280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29460 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g138100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g29460

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g29460

Limit To All Plant Sequences

>Glyma03g29460.3   sequence type=transcript   gene model=Glyma03g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTTACCAAGGAAGGAGTAGAGATTAAGATTGAAAAGAAGGTAAACATGCGTGTCCAATAATATAAATACACGAAAGGTGAAGGACTCAACAAGCAAAGAAAAAGAAAAACTTCCATTAATCCATTCCTACAAAACACAATCTGAAAATTATATATTATTGGTCAGAAAATATTTTGCTTTCTTCCTTTGAGTAGTAGTGTAAGAGTTTGCATTCCTCAGGACCCCATCTTCATCATGTGTGTGGTCTACACTCATCCCTCCATTCTCATTCGTTAATAACAATCTCACAAAAACAAAAGTACACCCTAATCCTATGCTTGCTCGATCATCGAATGAAAAACCAAAACCCTTTCTTTCACTTTGTTGTCTCTTCTCACCACTTTCCCTTCACTAGTCACTACTAACATTATTAAAAACACGCTATGAACAACGAGTACCCAACAATCATCGCTTCCACCACCCACGGATCATTAGAGGAACAAGAAGATGAACACATCACTGAAATCAGAGAAATCCACGAGTTAACCCCGCCGCCGCCACGTGGAAGAGCCTGGGAGACAGTGCATCATACCCACAGGTCAAGCTCTCTGTCCGTAGCTTCAGAAGGTGGCGCCTCTTCCAGCGACAACTTCAGCATGAGCAGAGAGTTCAGCGCTCTGGTTCTCGCAGGGTCCTGCATCGACCACGACAACAACAACATAAGTCCCATGAACGAAAACAACCACAACAACAACAGCAATAGTAACAGCTTGTTGGGGAGGATCAGAGAAGAGGACTTGATGGAAGAGACGAACCCTTTGGCGATCGTGCCGGATAACCACCCTTTGCAGGACCCGGTTCCGTCGTCGACGTCTCAGGGAGTAAGGGGTGGTGGTGGTGGTGCACGTGAGGAGCACGTGTCGGTGCAGATGGTGAAGAAGGAGGAGGTGGATGCTAAGATATCGGCGTGGCAGAACGCGAAGATTAACAACAGGTTCAAGAGAGAAGACGCTGTCATCAATGGGTGGGAGAGCGAGCAGGTTCAAAAAGCTTCCTCTTGGATGAAGAAAGTTGAGGGTTGGAAGTTTGTCAGTTGTCACTGGTCAAATTTCAACTAGGATTTGTTTATTCAAGATGGTATGTGGGAGGAAGAAATATTTTTTTTTCCAGAATCTGAATGTTGATCGCTGGAAAACTCAAAACATATAATTTATTTGAAGCCTGAAGGATTATAAATGTTCAGTATTATGATAGAAAACATATCATAGCTTTCAAACATTTATTTTTTCTGAAT

>Glyma03g29460.4   sequence type=transcript   gene model=Glyma03g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTTACCAAGGAAGGAGTAGAGATTAAGATTGAAAAGAAGGTAAACATGCGTGTCCAATAATATAAATACACGAAAGGTGAAGGACTCAACAAGCAAAGAAAAAGAAAAACTTCCATTAATCCATTCCTACAAAACACAATCTGAAAATTATATATTATTGGTCAGAAAATATTTTGCTTTCTTCCTTTGAGTAGTAGTGTAAGAGTTTGCATTCCTCAGGACCCCATCTTCATCATGTGTGTGGTCTACACTCATCCCTCCATTCTCATTCGTTAATAACAATCTCACAAAAACAAAAGTACACCCTAATCCTATGCTTGCTCGATCATCGAATGAAAAACCAAAACCCTTTCTTTCACTTTGTTGTCTCTTCTCACCACTTTCCCTTCACTAGTCACTACTAACATTATTAAAAACACGCTATGAACAACGAGTACCCAACAATCATCGCTTCCACCACCCACGGATCATTAGAGGAACAAGAAGATGAACACATCACTGAAATCAGAGAAATCCACGAGTTAACCCCGCCGCCGCCACGTGGAAGAGCCTGGGAGACAGTGCATCATACCCACAGGTCAAGCTCTCTGTCCGTAGCTTCAGAAGGTGGCGCCTCTTCCAGCGACAACTTCAGCATGAGCAGAGAGTTCAGCGCTCTGGTTCTCGCAGGGTCCTGCATCGACCACGACAACAACAACATAAGTCCCATGAACGAAAACAACCACAACAACAACAGCAATAGTAACAGCTTGTTGGGGAGGATCAGAGAAGAGGACTTGATGGAAGAGACGAACCCTTTGGCGATCGTGCCGGATAACCACCCTTTGCAGGACCCGGTTCCGTCGTCGACGTCTCAGGGAGTAAGGGGTGGTGGTGGTGGTGCACGTGAGGAGCACGTGTCGGTGCAGATGGTGAAGAAGGAGGAGGTGGATGCTAAGATATCGGCGTGGCAGAACGCGAAGATTAACAACAGGTTCAAGAGAGAAGACGCTGTCATCAATGGGTGGGAGAGCGAGCAGGTTCAAAAAGCTTCCTCTTGGATGAAGAAAGTTGAGATGCATCTACAATTCCAAGAAATCTCCCATCAAAGGTGATTTGAAGTGGCTTGTCGTAAAGATCGAAAC

>Glyma03g29460.5   sequence type=transcript   gene model=Glyma03g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTTACCAAGGAAGGAGTAGAGATTAAGATTGAAAAGAAGGTAAACATGCGTGTCCAATAATATAAATACACGAAAGGTGAAGGACTCAACAAGCAAAGAAAAAGAAAAACTTCCATTAATCCATTCCTACAAAACACAATCTGAAAATTATATATTATTGGTCAGAAAATATTTTGCTTTCTTCCTTTGAGTAGTAGTGTAAGAGTTTGCATTCCTCAGGACCCCATCTTCATCATGTGTGTGGTCTACACTCATCCCTCCATTCTCATTCGTTAATAACAATCTCACAAAAACAAAAGTACACCCTAATCCTATGCTTGCTCGATCATCGAATGAAAAACCAAAACCCTTTCTTTCACTTTGTTGTCTCTTCTCACCACTTTCCCTTCACTAGTCACTACTAACATTATTAAAAACACGCTATGAACAACGAGTACCCAACAATCATCGCTTCCACCACCCACGGATCATTAGAGGAACAAGAAGATGAACACATCACTGAAATCAGAGAAATCCACGAGTTAACCCCGCCGCCGCCACGTGGAAGAGCCTGGGAGACAGTGCATCATACCCACAGGTCAAGCTCTCTGTCCGTAGCTTCAGAAGGTGGCGCCTCTTCCAGCGACAACTTCAGCATGAGCAGAGAGTTCAGCGCTCTGGTTCTCGCAGGGTCCTGCATCGACCACGACAACAACAACATAAGTCCCATGAACGAAAACAACCACAACAACAACAGCAATAGTAACAGCTTGTTGGGGAGGATCAGAGAAGAGGACTTGATGGAAGAGACGAACCCTTTGGCGATCGTGCCGGATAACCACCCTTTGCAGGACCCGGTTCCGTCGTCGACGTCTCAGGGAGTAAGGGGTGGTGGTGGTGGTGCACGTGAGGAGCACGTGTCGGTGCAGATGGTGAAGAAGGAGGAGGTGGATGCTAAGATATCGGCGTGGCAGAACGCGAAGATTAACAACAGGTTCAAGAGAGAAGACGCTGTCATCAATGGGTGGGAGAGCGAGCAGGTTCAAAAAGCTTCCTCTTGGATGAAGAAAGTTGAGAACAGGTTAATGTGAGGAGGCTACTGCTTTTGGCCTTTTAAATGCGTGTGGGGTTGGTTTATAAGAGCTTTCCTCATGTTGAACGTAAAGGTTCAGATCATACTATTGCAACAATCTTGGGTGAAATTTTGTAATATAAAATTTCTTCACGTGCACGCTATCTGTACTATGCCATAAAAAGTAAAAAAGCTGGTAAGATGTTTTGTCAAGTTCTATTCGTTCTAGTATCAAATTTTGCATTTGCTAACACCTAAGCTTGTTGTCATATTAACCACTTCTTTTTGTTTCTTTCCCAACAAGTTCAGTCAACACTATAATCATCACAGGATCCTTTGACCTCTCGTGATCACCCAAAATCTGTAAAG

Coding sequences of Glyma03g29460

Limit To All Plant Sequences

>Glyma03g29460.2   sequence type=CDS   gene model=Glyma03g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAACGAGTACCCAACAATCATCGCTTCCACCACCCACGGATCATTAGAGGAACAAGAAGATGAACACATCACTGAAATCAGAGAAATCCACGAGTTAACCCCGCCGCCGCCACGTGGAAGAGCCTGGGAGACAGTGCATCATACCCACAGGTCAAGCTCTCTGTCCGTAGCTTCAGAAGGTGGCGCCTCTTCCAGCGACAACTTCAGCATGAGCAGAGAGTTCAGCGCTCTGGTTCTCGCAGGGTCCTGCATCGACCACGACAACAACAACATAAGTCCCATGAACGAAAACAACCACAACAACAACAGCAATAGTAACAGCTTGTTGGGGAGGATCAGAGAAGAGGACTTGATGGAAGAGACGAACCCTTTGGCGATCGTGCCGGATAACCACCCTTTGCAGGACCCGGTTCCGTCGTCGACGTCTCAGGGAGTAAGGGGTGGTGGTGGTGGTGCACGTGAGGAGCACGTGTCGGTGCAGATGGTGAAGAAGGAGGAGGTGGATGCTAAGATATCGGCGTGGCAGAACGCGAAGATTAACAACAGGTTCAAGAGAGAAGACGCTGTCATCAATGGGTGGGAGAGCGAGCAGGTTCAAAAAGCTTCCTCTTGGATGAAGAAAGTTGAGAAGCTCAAATATTTCTCATCTCTTAACAGATCCAGACTTGCATAA

>Glyma03g29460.3   sequence type=CDS   gene model=Glyma03g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAACGAGTACCCAACAATCATCGCTTCCACCACCCACGGATCATTAGAGGAACAAGAAGATGAACACATCACTGAAATCAGAGAAATCCACGAGTTAACCCCGCCGCCGCCACGTGGAAGAGCCTGGGAGACAGTGCATCATACCCACAGGTCAAGCTCTCTGTCCGTAGCTTCAGAAGGTGGCGCCTCTTCCAGCGACAACTTCAGCATGAGCAGAGAGTTCAGCGCTCTGGTTCTCGCAGGGTCCTGCATCGACCACGACAACAACAACATAAGTCCCATGAACGAAAACAACCACAACAACAACAGCAATAGTAACAGCTTGTTGGGGAGGATCAGAGAAGAGGACTTGATGGAAGAGACGAACCCTTTGGCGATCGTGCCGGATAACCACCCTTTGCAGGACCCGGTTCCGTCGTCGACGTCTCAGGGAGTAAGGGGTGGTGGTGGTGGTGCACGTGAGGAGCACGTGTCGGTGCAGATGGTGAAGAAGGAGGAGGTGGATGCTAAGATATCGGCGTGGCAGAACGCGAAGATTAACAACAGGTTCAAGAGAGAAGACGCTGTCATCAATGGGTGGGAGAGCGAGCAGGTTCAAAAAGCTTCCTCTTGGATGAAGAAAGTTGAGGGTTGGAAGTTTGTCAGTTGTCACTGGTCAAATTTCAACTAG

>Glyma03g29460.4   sequence type=CDS   gene model=Glyma03g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAACGAGTACCCAACAATCATCGCTTCCACCACCCACGGATCATTAGAGGAACAAGAAGATGAACACATCACTGAAATCAGAGAAATCCACGAGTTAACCCCGCCGCCGCCACGTGGAAGAGCCTGGGAGACAGTGCATCATACCCACAGGTCAAGCTCTCTGTCCGTAGCTTCAGAAGGTGGCGCCTCTTCCAGCGACAACTTCAGCATGAGCAGAGAGTTCAGCGCTCTGGTTCTCGCAGGGTCCTGCATCGACCACGACAACAACAACATAAGTCCCATGAACGAAAACAACCACAACAACAACAGCAATAGTAACAGCTTGTTGGGGAGGATCAGAGAAGAGGACTTGATGGAAGAGACGAACCCTTTGGCGATCGTGCCGGATAACCACCCTTTGCAGGACCCGGTTCCGTCGTCGACGTCTCAGGGAGTAAGGGGTGGTGGTGGTGGTGCACGTGAGGAGCACGTGTCGGTGCAGATGGTGAAGAAGGAGGAGGTGGATGCTAAGATATCGGCGTGGCAGAACGCGAAGATTAACAACAGGTTCAAGAGAGAAGACGCTGTCATCAATGGGTGGGAGAGCGAGCAGGTTCAAAAAGCTTCCTCTTGGATGAAGAAAGTTGAGATGCATCTACAATTCCAAGAAATCTCCCATCAAAGGTGA

>Glyma03g29460.5   sequence type=CDS   gene model=Glyma03g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAACGAGTACCCAACAATCATCGCTTCCACCACCCACGGATCATTAGAGGAACAAGAAGATGAACACATCACTGAAATCAGAGAAATCCACGAGTTAACCCCGCCGCCGCCACGTGGAAGAGCCTGGGAGACAGTGCATCATACCCACAGGTCAAGCTCTCTGTCCGTAGCTTCAGAAGGTGGCGCCTCTTCCAGCGACAACTTCAGCATGAGCAGAGAGTTCAGCGCTCTGGTTCTCGCAGGGTCCTGCATCGACCACGACAACAACAACATAAGTCCCATGAACGAAAACAACCACAACAACAACAGCAATAGTAACAGCTTGTTGGGGAGGATCAGAGAAGAGGACTTGATGGAAGAGACGAACCCTTTGGCGATCGTGCCGGATAACCACCCTTTGCAGGACCCGGTTCCGTCGTCGACGTCTCAGGGAGTAAGGGGTGGTGGTGGTGGTGCACGTGAGGAGCACGTGTCGGTGCAGATGGTGAAGAAGGAGGAGGTGGATGCTAAGATATCGGCGTGGCAGAACGCGAAGATTAACAACAGGTTCAAGAGAGAAGACGCTGTCATCAATGGGTGGGAGAGCGAGCAGGTTCAAAAAGCTTCCTCTTGGATGAAGAAAGTTGAGAACAGGTTAATGTGA

Predicted protein sequences of Glyma03g29460

Limit To All Plant Sequences

>Glyma03g29460.2   sequence type=predicted peptide   gene model=Glyma03g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNEYPTIIASTTHGSLEEQEDEHITEIREIHELTPPPPRGRAWETVHHTHRSSSLSVASEGGASSSDNFSMSREFSALVLAGSCIDHDNNNISPMNENNHNNNSNSNSLLGRIREEDLMEETNPLAIVPDNHPLQDPVPSSTSQGVRGGGGGAREEHVSVQMVKKEEVDAKISAWQNAKINNRFKREDAVINGWESEQVQKASSWMKKVEKLKYFSSLNRSRLA*

>Glyma03g29460.3   sequence type=predicted peptide   gene model=Glyma03g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNEYPTIIASTTHGSLEEQEDEHITEIREIHELTPPPPRGRAWETVHHTHRSSSLSVASEGGASSSDNFSMSREFSALVLAGSCIDHDNNNISPMNENNHNNNSNSNSLLGRIREEDLMEETNPLAIVPDNHPLQDPVPSSTSQGVRGGGGGAREEHVSVQMVKKEEVDAKISAWQNAKINNRFKREDAVINGWESEQVQKASSWMKKVEGWKFVSCHWSNFN*

>Glyma03g29460.4   sequence type=predicted peptide   gene model=Glyma03g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNEYPTIIASTTHGSLEEQEDEHITEIREIHELTPPPPRGRAWETVHHTHRSSSLSVASEGGASSSDNFSMSREFSALVLAGSCIDHDNNNISPMNENNHNNNSNSNSLLGRIREEDLMEETNPLAIVPDNHPLQDPVPSSTSQGVRGGGGGAREEHVSVQMVKKEEVDAKISAWQNAKINNRFKREDAVINGWESEQVQKASSWMKKVEMHLQFQEISHQR*

>Glyma03g29460.5   sequence type=predicted peptide   gene model=Glyma03g29460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNNEYPTIIASTTHGSLEEQEDEHITEIREIHELTPPPPRGRAWETVHHTHRSSSLSVASEGGASSSDNFSMSREFSALVLAGSCIDHDNNNISPMNENNHNNNSNSNSLLGRIREEDLMEETNPLAIVPDNHPLQDPVPSSTSQGVRGGGGGAREEHVSVQMVKKEEVDAKISAWQNAKINNRFKREDAVINGWESEQVQKASSWMKKVENRLM*

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