Glyma03g29370 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g29370

Feature Type:	gene_model
Chromosome:	Gm03
Start:	37363977
stop:	37367228
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g29370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14470	AT	Annotation by Michelle Graham. TAIR10: NB-ARC domain-containing disease resistance protein \| chr3:4857940-4861104 FORWARD LENGTH=1054	SoyBase	E_val: 6.00E-96	ISS
GO:0006952	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0043531	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP binding	SoyBase	N/A	ISS
KOG4658	KOG	Apoptotic ATPase	JGI		ISS
PTHR23155	Panther	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF00931	PFAM	NB-ARC domain	JGI		ISS
UniRef100_C6ZS31	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance protein n=1 Tax=Glycine max RepID=C6ZS31_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A00B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A00B related cluster n=1 Tax=unknown RepID=UPI000233A00B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g29370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29370

Paralog	Evidence	Comments
Glyma19g32180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g137200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g29370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g29370

Limit To All Plant Sequences

>Glyma03g29370.2   sequence type=CDS   gene model=Glyma03g29370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAATCATTTCTCTTCAGCATTGCAGAGTCACTCCTTTCAAAGCTTGCTTCGCAGGCTTATGAGGAAGCTTCTCGTGTGCTGGGTTTGTACGACCATCTCAAAAACCTTAAAGACACCCTATCATTAGTCCAGGCTGTCCTGTTGGACGCTGATCAAAAGCAGGAGAAGAACCATGAGCTGCGGGAATGGCTGAGGCAGCTCAAACGTGTCTTCTTTGATGCCGAAAATGTTCTAGATGAATTTGAATGCCAAACACTGCAAAACCAAGTTATCAAAGCTCATGGTACCACCAAAGACAAGGTAAGTCACTTCTTATCAACTTCTAATCCACTTGTTTTTCGTTACAAGATGGCTCAACAAATCAAAGATATCAGCATGAGACTAGACAAGGTTGCAGCTGATAGGCATAAGTTTGGCCTTCAACCAATTGATGTTGACACACGTGTTGTGCACCGGAGAGAGATGAGAGAGATGACATACTCCCATGTGAACGATTCAGATGTGATAGGAAGGGAACAAGACAAAGGAGAGATCATAGAGCTCTTGATGCAGCAGAATCCCAATGATGATCATAAAAGTCTCTCTGTTATCCCCATAGTGGGGATGGGAGGCTTGGGAAAGACCACACTTGCAAAGTTTGTGTTCAATGACAAGGGGATAAATAAGTGTTTCCCATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACCTTAAGCAACTCATTATCAAAATCATCAATTCTGCTGATGATTCTGTTTTTCTTGCTGATGCTCCTGATCGCCAAAAGAATTTAAACAAAATGGATCTGGAGCAACTGCAAAATCAATTGAGAAACAAACTTGCTGATCAAAAGTTCCTACTCGTCTTGGACGACGTATGGAATGAAGACCGTGTTAAATGGGTTGGCTTGAGGAATTTAATTCATGTAGGTGCTGCTGCAGGTAGTAAGATTCTAGTTACTACGCGTAGTCATTCCATTGCTTCCATGATGGGCACGGCTTCCTCTCATATTTTACAAGGTCTTTCTCTGGAGGATTCATGGTCTTTGTTTGTCAGATGGGCGTTTAATGAAGGAGAAGAGGAAAACTATCCTCAGTTGATAAATATTGGCAGAGAAATTGTGAAAAAATGCAGAGGGGTTCCTTTGGCGGTGAGAACACTAGGGAGTTTACTATTCTCCAAATTTGAGGCAAATCAGTGGGAAGATGCGAGAGACAATGAAATTTGGAATTTGCCACAGAAAAAAGATGACATTTTACCAGCCCTCAAATTGAGTTACGATCTCATGCCGTCCTATTTGAGGCAATGCTTTGCTCTATTTTCTCTTTACCCTAAGGATTACAACTTTACTAGTTATGGTGTGATTCACCTTTGGGGGGCACTCGGATTCCTTGCATCACCAAAAAAGAATAGGGCTCAAGATGATATTGCGATTCAGTATTTGTGGGAACTATTCTCAAGATCTCTTCTTCAAGATTTTGTAAGCCATGGCACCTATTATACATTTCACATACATGATTTGGTGCATGATCTTGCTCTGTTCGTTGCAAAAGATGATTGTCTACTTGTAAATTCCCACATTCAAAGTATACCTGAGAACATTCAGCATCTATCTTTTGTTGAAAAAGATTTTCATGGCAAATCACTCACCACAAAAGCAGTAGGTGTGAGAACCATAATTTATCCTGGTGCTGGAGCGGAGGCAAACTTTGAAGCTAATAAATACTTGAGGATTTTGCATTTAACGCATTCTACCTTTGAAACTTTGCCTCCTTTCATTGGGAAGTTAAAACATTTAAGATGTCTTAATCTTCGCAAAAATAAGAAAATTAAGAGACTCCCTGATTCCATTTGTAAGCTCCAAAATTTGCAGTTTTTGTTCCTGAAGGGGTGCACTGAGCTTGAAACCCTGCCCAAAGGTTTAAGAAAATTGATAAGCCTCTATCATTTCGAGATAACCACAAAGCAAGCTGTTTTACCTGAGAACGAGATAGCAAACTTGAGTTATCTTCAATATTTGACAATTGCATATTGTGATAATGTGGAGTCTTTATTCTCAGGGATAGAGTTTCCTGTTCTTAAACTACTGTCTGTTTGGTGCTGTAAGAGACTAAAGTCTTTGCCACTTGACAGTAAACATTTTCCTGCATTAGAGACTTTGCATGTTATAAAATGTGACAAGTTGGAATTGTTCAAGGGCCATGGAGATCAAAACTTCAACTTAAAGTTAAAAGAAGTAACATTTGTCATAATGCCACAGCTAGAGATTCTACCTCATTGGGTTCAAGGATGTGCTAACACATTACTATCCTTGCATCTATCATACTGCCTCAATCTTGAGGTGCTTCCTGATTGGCTGCCAATGCTAACTAATCTAAGAGAACTGAATATTGATTTTTGTCTAAAGCTGCGGTCTCTTCCAGATGGCATGCATCGCCTCACTGCCCTTGAACATTTGCGAATCAAAGATTGTGATGAATTATGCATAAAATACAAGCCGCAAGTTGGAGAGTGTTGGGACCAAATATCACACATCAAGCAGATTACGATTGATGAACAAAAAATCTGGAAGAAGAGGTAG

Predicted protein sequences of Glyma03g29370

Limit To All Plant Sequences

>Glyma03g29370.2   sequence type=predicted peptide   gene model=Glyma03g29370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAESFLFSIAESLLSKLASQAYEEASRVLGLYDHLKNLKDTLSLVQAVLLDADQKQEKNHELREWLRQLKRVFFDAENVLDEFECQTLQNQVIKAHGTTKDKVSHFLSTSNPLVFRYKMAQQIKDISMRLDKVAADRHKFGLQPIDVDTRVVHRREMREMTYSHVNDSDVIGREQDKGEIIELLMQQNPNDDHKSLSVIPIVGMGGLGKTTLAKFVFNDKGINKCFPLKMWVCVSDDFDLKQLIIKIINSADDSVFLADAPDRQKNLNKMDLEQLQNQLRNKLADQKFLLVLDDVWNEDRVKWVGLRNLIHVGAAAGSKILVTTRSHSIASMMGTASSHILQGLSLEDSWSLFVRWAFNEGEEENYPQLINIGREIVKKCRGVPLAVRTLGSLLFSKFEANQWEDARDNEIWNLPQKKDDILPALKLSYDLMPSYLRQCFALFSLYPKDYNFTSYGVIHLWGALGFLASPKKNRAQDDIAIQYLWELFSRSLLQDFVSHGTYYTFHIHDLVHDLALFVAKDDCLLVNSHIQSIPENIQHLSFVEKDFHGKSLTTKAVGVRTIIYPGAGAEANFEANKYLRILHLTHSTFETLPPFIGKLKHLRCLNLRKNKKIKRLPDSICKLQNLQFLFLKGCTELETLPKGLRKLISLYHFEITTKQAVLPENEIANLSYLQYLTIAYCDNVESLFSGIEFPVLKLLSVWCCKRLKSLPLDSKHFPALETLHVIKCDKLELFKGHGDQNFNLKLKEVTFVIMPQLEILPHWVQGCANTLLSLHLSYCLNLEVLPDWLPMLTNLRELNIDFCLKLRSLPDGMHRLTALEHLRIKDCDELCIKYKPQVGECWDQISHIKQITIDEQKIWKKR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain