Glyma03g29320 - SoyBase

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Report for Sequence Feature Glyma03g29320

Feature Type:	gene_model
Chromosome:	Gm03
Start:	37311803
stop:	37315670
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g29320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G35910	AT	Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein \| chr4:17008817-17011014 REVERSE LENGTH=458	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2594	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR20882	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR20882:SF1	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF10288	PFAM	Protein of unknown function (DUF2392)	JGI		ISS
UniRef100_I1JND0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JND0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O65628	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytoplasmic tRNA 2-thiolation protein 2 n=1 Tax=Arabidopsis thaliana RepID=CTU2_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g29320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29320

Paralog	Evidence	Comments
Glyma19g32061	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g136900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g29320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g29320

Limit To All Plant Sequences

>Glyma03g29320.2   sequence type=transcript   gene model=Glyma03g29320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTTTTTTCCCTGAGTAATGATGTAAGAATAAAATAATTATTACGAATATTATATTATCATAATTTAAAAAAAAAATCGCGGAATTTAAAACCCGCAAAACCCTAACGAGGTGAGGGCGATCACCGTCGATGGCGTGCAACGGCTCTGGGTGCCAGTCCGGTGGCTGCTACAAAGACGAAGACGCAACATGTAAGCAACCACCCAAGTCCGAAGAAGCCGATTCAAAAAACCCTAGCAATGTCTGCATCAAGTGCAAGCTCAACGACGCCGTTTCGGGCTACGGCGGAATCGACGATGGTCGTTTCTGCGCCGATTGCTTCAAAACCAACTTGTTCGGCAAGTTTCGTTTCGCCGTCACTTCAAATGCCATGATAACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAGGGTAGCTTTGCAATTTGTTCATGACATGCAAGAGAGGGCTCAGAGGAACTTCGATGCGAGTAGGGACCGGTCGTTGCCGGTGTTTGGTGTTGGAGTTGTGTTTATTGATGAGAGTGCCGTGTTGCCGATTCCTTCTAATGAAATGGAGGAAGCGGTTGAGGTTGTTAGTGAGGTTGTGTCGAGTTTGGCCCCACCAAGGAAGGAGTTGCATATTGTTCCTATTGAGACCGTTTATTCCTCGGATTCTGGTGATGGGAAGGAGAGGATAACCAAGGTAGTGAACACAGTGATTGATCCAACGGGAAGGGAGGATGTATTGCTCTGTCTGCGAATGTTGGCGCTACAAAAGGTTGCTTCTGAATTTGGGTATAACAGGATCATTCTGGGGTCATGCATTTCGAGGATTGCTTGCCATGTCATTTCAGCCACTGTGAAGGAAGAAAACCCATCACGAGAGAGCACAATTGTAAGAACAGCTGGTAAACTTACTCCCTTCCAATTCAACAGGATTCCAGAGATCATTGATGGTAATGTTCCCTTGGCAACTCGAAGACGCCAGAAGAGATATAATCTCAAATCCAATGAATCTGTTTCCTCAGAATCTTTCTGTCCTCTCTGCAACAGCCCACTCGACAAGAGTGAGATTACTGATTGGAGTAATATTGATAGCCACAGAAGTAGTGATATTTTTTATAATACCTGCTGTTCAAGTTGTCGGTTTCAGATACTTCCAAGTGATTCCATGGCAATGGAACAATTTTATATGGATTTGCCTCAGTCGGTGGTTGGCCGAGCAAAGCAAGCCAACAATGGTAATTTGAGTCTGCTAAGGTGAGTATCTGATTTGCTATCAACATCAGTTGAATTTATTTCAAATTTAGCAATAACTCATTAAGCCACTTGGACCTTGGCCACTGGCCTTGTTGAAAACACCAACTTTAGTATCATATCAATGTAATCTGTTTTCTAGTTAATTTTGCTAGTATATGTTGTTAAATGAAAGTATGGTAAAGGAAATTATATGAATATCAAAATTTTGGATTATCTGTTTCTTTGGCTTTGCTTGTATAGTCCAATAAAATGGATCCTTTTGGTAGCTTTGAGTCCATGACTGAGTAAATTTTGAGGAAATGAAATTCCTGAATCAAATTGTTAGAAATCAAATTCTTTGACTACAATTATGGAAATGTCATACTTTAATTTAGGTCACATAGTCCAGTCTTTGGGGTTTTTTTCCTGGTAAGGGGTTCTTTCATGTGTTCAGGCTTTT

>Glyma03g29320.3   sequence type=transcript   gene model=Glyma03g29320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTTTTTTTCCCTGAGTAATGATGTAAGAATAAAATAATTATTACGAATATTATATTATCATAATTTAAAAAAAAAATCGCGGAATTTAAAACCCGCAAAACCCTAACGAGGTGAGGGCGATCACCGTCGATGGCGTGCAACGGCTCTGGGTGCCAGTCCGGTGGCTGCTACAAAGACGAAGACGCAACATGTAAGCAACCACCCAAGTCCGAAGAAGCCGATTCAAAAAACCCTAGCAATGTCTGCATCAAGTGCAAGCTCAACGACGCCGTTTCGGGCTACGGCGGAATCGACGATGGTCGTTTCTGCGCCGATTGCTTCAAAACCAACTTGTTCGGCAAGTTTCGTTTCGCCGTCACTTCAAATGCCATGATAACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAGGGTAGCTTTGCAATTTGTTCATGACATGCAAGAGAGGGCTCAGAGGAACTTCGATGCGAGTAGGGACCGGTCGTTGCCGGTGTTTGGTGTTGGAGTTGTGTTTATTGATGAGAGTGCCGTGTTGCCGATTCCTTCTAATGAAATGGAGGAAGCGGTTGAGGTTGTTAGTGAGGTTGTGTCGAGTTTGGCCCCACCAAGGAAGGAGTTGCATATTGTTCCTATTGAGACCGTTTATTCCTCGGATTCTGGTGATGGGAAGGAGAGGATAACCAAGGTAGTGAACACAGTGATTGATCCAACGGGAAGGGAGGATGTATTGCTCTGTCTGCGAATGTTGGCGCTACAAAAGGTTGCTTCTGAATTTGGGTATAACAGGATCATTCTGGGGTCATGCATTTCGAGGATTGCTTGCCATGTCATTTCAGCCACTGTGAAGGGTCAAGGATACTCATTACCTGCAGATATACAGTATGTTGATGCTAGATGGGAAGTTCCTGTTGTACTTCCTCTGCGTGATTGTTTTGCTCAAGAGATCAACATGCTATGCCACCTTGATGGGAAGAAAACCCATCACGAGAGAGCACAATTGTAAGAACAGCTGGTAAACTTACTCCCTTCCAATTCAACAGGATTCCAGAGATCATTGATGGTAATGTTCCCTTGGCAACTCGAAGACGCCAGAAGAGATATAATCTCAAATCCAATGAATCTGTTTCCTCAGAATCTTTCTGTCCTCTCTGCAACAGCCCACTCGACAAGAGTGAGATTACTGATTGGAGTAATATTGATAGCCACAGAAGTAGTGATATTTTTTATAATACCTGCTGTTCAAGTTGTCGGTTTCAGATACTTCCAAGTGATTCCATGGCAATGGAACAATTTTATATGGATTTGCCTCAGTCGGTGGTTGGCCGAGCAAAGCAAGCCAACAATGGTAATTTGAGTCTGCTAAGGGAACAAATTCAAGATTACCTGCTCTCAGATGGTGAAGATGAAACATAGGACTACTTTTTTACATTGAGGCTCTATGTTGAAGGGATAAATACTGGTTGTGGTAATTTAATTTACAGTTTGAGTGAGTGAGAGGTTTCCGTTGGCCTTTGGCTAATACAAAAAAGAGTTATAGAGCACTGAGCTTCACTAATTTTTGAGAGCATATTTAAGCAGGGATAGATTAGATAGCTAATTTTTATGTATCCTTGGCAATTCTAAGAGAGATAAAGTTGAGTCCGAATACTCGTTGGAGGCATCAAGGTTATTGAGATATTGCTTTAGCATTTATTTGCGTCTATTGTATTTTATGGGAAATGTTGGACCAAGACAACAGTAAAGAAATTATTTTGCAACTTGTGACTAGTATGTATGGCATTGTTTTTCCCCATG

Coding sequences of Glyma03g29320

Limit To All Plant Sequences

>Glyma03g29320.1   sequence type=CDS   gene model=Glyma03g29320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTGCAACGGCTCTGGGTGCCAGTCCGGTGGCTGCTACAAAGACGAAGACGCAACATGTAAGCAACCACCCAAGTCCGAAGAAGCCGATTCAAAAAACCCTAGCAATGTCTGCATCAAGTGCAAGCTCAACGACGCCGTTTCGGGCTACGGCGGAATCGACGATGGTCGTTTCTGCGCCGATTGCTTCAAAACCAACTTGTTCGGCAAGTTTCGTTTCGCCGTCACTTCAAATGCCATGATAACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAGGGTAGCTTTGCAATTTGTTCATGACATGCAAGAGAGGGCTCAGAGGAACTTCGATGCGAGTAGGGACCGGTCGTTGCCGGTGTTTGGTGTTGGAGTTGTGTTTATTGATGAGAGTGCCGTGTTGCCGATTCCTTCTAATGAAATGGAGGAAGCGGTTGAGGTTGTTAGTGAGGTTGTGTCGAGTTTGGCCCCACCAAGGAAGGAGTTGCATATTGTTCCTATTGAGACCGTTTATTCCTCGGATTCTGGTGATGGGAAGGAGAGGATAACCAAGGTAGTGAACACAGTGATTGATCCAACGGGAAGGGAGGATGTATTGCTCTGTCTGCGAATGTTGGCGCTACAAAAGGTTGCTTCTGAATTTGGGTATAACAGGATCATTCTGGGGTCATGCATTTCGAGGATTGCTTGCCATGTCATTTCAGCCACTGTGAAGGGTCAAGGATACTCATTACCTGCAGATATACAGTATGTTGATGCTAGATGGGAAGTTCCTGTTGTACTTCCTCTGCGTGATTGTTTTGCTCAAGAGATCAACATGCTATGCCACCTTGATGGTCTAAAGACTGTAAAGTTGTCTACAGATCTGTGCTCTAGCATTAATGGCTTGGTATCATCTTTTGTGGCTTTATTGCAGGAAGAAAACCCATCACGAGAGAGCACAATTGTAAGAACAGCTGGTAAACTTACTCCCTTCCAATTCAACAGGATTCCAGAGATCATTGATGGTAATGTTCCCTTGGCAACTCGAAGACGCCAGAAGAGATATAATCTCAAATCCAATGAATCTGTTTCCTCAGAATCTTTCTGTCCTCTCTGCAACAGCCCACTCGACAAGAGTGAGATTACTGATTGGAGTAATATTGATAGCCACAGAAGTAGTGATATTTTTTATAATACCTGCTGTTCAAGTTGTCGGTTTCAGATACTTCCAAGTGATTCCATGGCAATGGAACAATTTTATATGGATTTGCCTCAGTCGGTGGTTGGCCGAGCAAAGCAAGCCAACAATGGTAATTTGAGTCTGCTAAGGGAACAAATTCAAGATTACCTGCTCTCAGATGGTGAAGATGAAACATAG

>Glyma03g29320.2   sequence type=CDS   gene model=Glyma03g29320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTGCAACGGCTCTGGGTGCCAGTCCGGTGGCTGCTACAAAGACGAAGACGCAACATGTAAGCAACCACCCAAGTCCGAAGAAGCCGATTCAAAAAACCCTAGCAATGTCTGCATCAAGTGCAAGCTCAACGACGCCGTTTCGGGCTACGGCGGAATCGACGATGGTCGTTTCTGCGCCGATTGCTTCAAAACCAACTTGTTCGGCAAGTTTCGTTTCGCCGTCACTTCAAATGCCATGATAACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAGGGTAGCTTTGCAATTTGTTCATGACATGCAAGAGAGGGCTCAGAGGAACTTCGATGCGAGTAGGGACCGGTCGTTGCCGGTGTTTGGTGTTGGAGTTGTGTTTATTGATGAGAGTGCCGTGTTGCCGATTCCTTCTAATGAAATGGAGGAAGCGGTTGAGGTTGTTAGTGAGGTTGTGTCGAGTTTGGCCCCACCAAGGAAGGAGTTGCATATTGTTCCTATTGAGACCGTTTATTCCTCGGATTCTGGTGATGGGAAGGAGAGGATAACCAAGGTAGTGAACACAGTGATTGATCCAACGGGAAGGGAGGATGTATTGCTCTGTCTGCGAATGTTGGCGCTACAAAAGGTTGCTTCTGAATTTGGGTATAACAGGATCATTCTGGGGTCATGCATTTCGAGGATTGCTTGCCATGTCATTTCAGCCACTGTGAAGGAAGAAAACCCATCACGAGAGAGCACAATTGTAAGAACAGCTGGTAAACTTACTCCCTTCCAATTCAACAGGATTCCAGAGATCATTGATGGTAATGTTCCCTTGGCAACTCGAAGACGCCAGAAGAGATATAATCTCAAATCCAATGAATCTGTTTCCTCAGAATCTTTCTGTCCTCTCTGCAACAGCCCACTCGACAAGAGTGAGATTACTGATTGGAGTAATATTGATAGCCACAGAAGTAGTGATATTTTTTATAATACCTGCTGTTCAAGTTGTCGGTTTCAGATACTTCCAAGTGATTCCATGGCAATGGAACAATTTTATATGGATTTGCCTCAGTCGGTGGTTGGCCGAGCAAAGCAAGCCAACAATGGTAATTTGAGTCTGCTAAGGTGA

>Glyma03g29320.3   sequence type=CDS   gene model=Glyma03g29320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTGCAACGGCTCTGGGTGCCAGTCCGGTGGCTGCTACAAAGACGAAGACGCAACATGTAAGCAACCACCCAAGTCCGAAGAAGCCGATTCAAAAAACCCTAGCAATGTCTGCATCAAGTGCAAGCTCAACGACGCCGTTTCGGGCTACGGCGGAATCGACGATGGTCGTTTCTGCGCCGATTGCTTCAAAACCAACTTGTTCGGCAAGTTTCGTTTCGCCGTCACTTCAAATGCCATGATAACTCCCACGGACAAGGTCCTCGTTGCCTTCTCTGGTGGCCCTTCATCCAGGGTAGCTTTGCAATTTGTTCATGACATGCAAGAGAGGGCTCAGAGGAACTTCGATGCGAGTAGGGACCGGTCGTTGCCGGTGTTTGGTGTTGGAGTTGTGTTTATTGATGAGAGTGCCGTGTTGCCGATTCCTTCTAATGAAATGGAGGAAGCGGTTGAGGTTGTTAGTGAGGTTGTGTCGAGTTTGGCCCCACCAAGGAAGGAGTTGCATATTGTTCCTATTGAGACCGTTTATTCCTCGGATTCTGGTGATGGGAAGGAGAGGATAACCAAGGTAGTGAACACAGTGATTGATCCAACGGGAAGGGAGGATGTATTGCTCTGTCTGCGAATGTTGGCGCTACAAAAGGTTGCTTCTGAATTTGGGTATAACAGGATCATTCTGGGGTCATGCATTTCGAGGATTGCTTGCCATGTCATTTCAGCCACTGTGAAGGGTCAAGGATACTCATTACCTGCAGATATACAGTATGTTGATGCTAGATGGGAAGTTCCTGTTGTACTTCCTCTGCGTGATTGTTTTGCTCAAGAGATCAACATGCTATGCCACCTTGATGGGAAGAAAACCCATCACGAGAGAGCACAATTGTAA

Predicted protein sequences of Glyma03g29320

Limit To All Plant Sequences

>Glyma03g29320.1   sequence type=predicted peptide   gene model=Glyma03g29320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACNGSGCQSGGCYKDEDATCKQPPKSEEADSKNPSNVCIKCKLNDAVSGYGGIDDGRFCADCFKTNLFGKFRFAVTSNAMITPTDKVLVAFSGGPSSRVALQFVHDMQERAQRNFDASRDRSLPVFGVGVVFIDESAVLPIPSNEMEEAVEVVSEVVSSLAPPRKELHIVPIETVYSSDSGDGKERITKVVNTVIDPTGREDVLLCLRMLALQKVASEFGYNRIILGSCISRIACHVISATVKGQGYSLPADIQYVDARWEVPVVLPLRDCFAQEINMLCHLDGLKTVKLSTDLCSSINGLVSSFVALLQEENPSRESTIVRTAGKLTPFQFNRIPEIIDGNVPLATRRRQKRYNLKSNESVSSESFCPLCNSPLDKSEITDWSNIDSHRSSDIFYNTCCSSCRFQILPSDSMAMEQFYMDLPQSVVGRAKQANNGNLSLLREQIQDYLLSDGEDET*

>Glyma03g29320.2   sequence type=predicted peptide   gene model=Glyma03g29320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACNGSGCQSGGCYKDEDATCKQPPKSEEADSKNPSNVCIKCKLNDAVSGYGGIDDGRFCADCFKTNLFGKFRFAVTSNAMITPTDKVLVAFSGGPSSRVALQFVHDMQERAQRNFDASRDRSLPVFGVGVVFIDESAVLPIPSNEMEEAVEVVSEVVSSLAPPRKELHIVPIETVYSSDSGDGKERITKVVNTVIDPTGREDVLLCLRMLALQKVASEFGYNRIILGSCISRIACHVISATVKEENPSRESTIVRTAGKLTPFQFNRIPEIIDGNVPLATRRRQKRYNLKSNESVSSESFCPLCNSPLDKSEITDWSNIDSHRSSDIFYNTCCSSCRFQILPSDSMAMEQFYMDLPQSVVGRAKQANNGNLSLLR*

>Glyma03g29320.3   sequence type=predicted peptide   gene model=Glyma03g29320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MACNGSGCQSGGCYKDEDATCKQPPKSEEADSKNPSNVCIKCKLNDAVSGYGGIDDGRFCADCFKTNLFGKFRFAVTSNAMITPTDKVLVAFSGGPSSRVALQFVHDMQERAQRNFDASRDRSLPVFGVGVVFIDESAVLPIPSNEMEEAVEVVSEVVSSLAPPRKELHIVPIETVYSSDSGDGKERITKVVNTVIDPTGREDVLLCLRMLALQKVASEFGYNRIILGSCISRIACHVISATVKGQGYSLPADIQYVDARWEVPVVLPLRDCFAQEINMLCHLDGKKTHHERAQL*

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