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Report for Sequence Feature Glyma03g29301

Feature Type:gene_model
Chromosome:Gm03
Start:37297480
stop:37300442
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g29301
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G41750AT Annotation by Michelle Graham. TAIR10: DTW domain-containing protein | chr2:17421746-17422507 REVERSE LENGTH=253 SoyBaseE_val: 2.00E-79ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG4382 KOG Uncharacterized conserved protein, contains DTW domain JGI ISS
PTHR21392Panther UNCHARACTERIZED JGI ISS
PF03942PFAM DTW domain JGI ISS
UniRef100_D7LHB1UniRef Annotation by Michelle Graham. Most informative UniRef hit: DTW domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LHB1_ARALL SoyBaseE_val: 4.00E-78ISS
UniRef100_UPI0002337AA6UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002337AA6 related cluster n=1 Tax=unknown RepID=UPI0002337AA6 SoyBaseE_val: 3.00E-172ISS

Expression Patterns of Glyma03g29301
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g29301 not represented in the dataset
Glyma03g29301 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29301
ParalogEvidenceComments
Glyma19g32040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29301 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g136600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g29301
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma03g29301
>Glyma03g29301.2   sequence type=transcript   gene model=Glyma03g29301   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCCGTATCACATAAAACAACGACGTGTATGAATCTCACGTGATTTCATACCACTTAATGAAAATCTTTTTCTCTATTTCTATGACTCTTAACCAAAAAGCAATGTAAGAAGTGATTTTGTGCACTGCACTGCATAGCATTGGATGGAGGTGGAAGCAGCAGAAGCAGACTTCCCTTCACCGGAGGAGCCTCATCGTCAGCGCCGCTCCATCTGCTCCAACTGCGACCGTCCCAGTCGCGTCTGTCTCTGCCACGCGCTTCCACTTCCTCCAATCCAAACCACCACCCAAATCCTCATCATCCAACACCCCCACGAGGCCCGCCACAAGCTCTCCACCACCCCCATCCTCACCAAGTCCCTCCTCCGCGCCTCCTCCCTCACCGCCCGCCGCCTCCGCCGCGGCCTCTCCCCCCTCCTCGACCGCTCTCCCCCCGCCCTCTACCTCTTCCCCTCCTCCGCCTCCGCCCTCCACATCTCCTCCCTCCGCCCCTCCTCTGGCCTCGTCCTCATCGCCTTCGACGCCACGTGGCAGCACGCGAGGGAAATGGTGAGCGCCAGCGAGGAGTTCCTTTCTAAATTCGCAACTAGGGTTTGTTTGGGCATCGATGAGAGCTCCAGCGGCGGGAGCATTTACGATTCCGAGTTGGTTTTAAGGAAGGAGCCTTCTGCCGGGTGCGTGAGTACCATGGAGGCTGTGGCTAGGGCACTGCGCGTGCTCGAGCCCAATGGGGTCGAGATTGAAGCGAGGTTGGTTGGGGTTTTGAGGGAGATGGTCAGGTTACAGGCTGGGTTTTTGAAGCCCGTGAAGCCCAGGCCTAAGTTGTTGAAGAAGAAGGAAAAGAATGAGGGTTCTGATCAAGTTTCTTCATGAAGCTTGGATTTCACATAGAAGAATTGAGATGGTGAGAATATGGGCTTCTGGAACTAAAGTGGATTTGACTAACATAGCGTTCCAACCATTTGTTCTCTGTTGAGTGCTTTCCTTCAATTCTTCATGAATGCATGACTTAATTACAATTTCAAGAATAGGAAGGGAAAAGAACAAACTTAGCTGATCAAAATTAATATGAATGTGAAGAGTAGGTTACATGAGAGAAGACTGCAAACCATTTTTGACATGCAAGACTGCCACAGGAAGGGAGGTATAATCTAAATCAAACTTTGAAGGAAAGGAATCAAGGATACTTGTCCAAAAGAAGGTGCTTTTGTCTTTATTTTTTAAGCTTTGTAAGGATTCATAACTCAAATGATTTAGCAAAGTCTAAAATGTGATAAGTTTGTCCCGTGCTATTTTTTCTTAAGGACATGCCTCACTTGAGTATTTGGGGTGTCATCCTACTTGGG

>Glyma03g29301.3   sequence type=transcript   gene model=Glyma03g29301   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCCGTATCACATAAAACAACGACGTGTATGAATCTCACGTGATTTCATACCACTTAATGAAAATCTTTTTCTCTATTTCTATGACTCTTAACCAAAAAGCAATGTAAGAAGTGATTTTGTGCACTGCACTGCATAGCATTGGATGGAGGTGGAAGCAGCAGAAGCAGACTTCCCTTCACCGGAGGAGCCTCATCGTCAGCGCCGCTCCATCTGCTCCAACTGCGACCGTCCCAGTCGCGTCTGTCTCTGCCACGCGCTTCCACTTCCTCCAATCCAAACCACCACCCAAATCCTCATCATCCAACACCCCCACGAGGCCCGCCACAAGCTCTCCACCACCCCCATCCTCACCAAGTCCCTCCTCCGCGCCTCCTCCCTCACCGCCCGCCGCCTCCGCCGCGGCCTCTCCCCCCTCCTCGACCGCTCTCCCCCCGCCCTCTACCTCTTCCCCTCCTCCGCCTCCGCCCTCCACATCTCCTCCCTCCGCCCCTCCTCTGGCCTCGTCCTCATCGCCTTCGACGCCACGTGGCAGCACGCGAGGGAAATGGTGAGCGCCAGCGAGGAGTTCCTTTCTAAATTCGCAACTAGGGTTTGTTTGGGCATCGATGAGAGCTCCAGCGGCGGGAGCATTTACGATTCCGAGTTGGTTTTAAGGAAGGAGCCTTCTGCCGGGTGCGTGAGTACCATGGAGGCTGTGGCTAGGGCACTGCGCGTGCTCGAGCCCAATGGGGTCGAGATTGAAGCGAGGTTGGTTGGGGTTTTGAGGGAGATGGTCAGGTTACAGGCTGGGTTTTTGAAGCCCGTGAAGCCCAGGCCTAAGTTGTTGAAGAAGAAGGAAAAGAATGAGGGTTCTGATCAAGTTTCTTCATGAAGCTTGGATTTCACATAGAAGAATTGAGATGGTGAGAATATGGGCTTCTGGAACTAAAGTGGATTTGACTAACATAGCGTTCCAACCATTTGTTCTCTGTTGAGTGCTTTCCTTCAATTCTTCATGAATGCATGACTTAATTACAATTTCAAGAATAGGAAGGGAAAAGAACAAACTTAGCTGATCAAAATTAATATGAATGTGAAGAGTAGGTTACATGAGAGAAGACTGCAAACCATTTTTGACATGCAAGACTGCCACAGGTATTGTCTTTAACTTTCTACTCATTCTAATTGTACATTCCTTCTGTATATATTTCAATCATTCCAAAGACTGATGGGGTGCTGGCAACCTTCCTGACTTATGTCGTGTTCCACTCTTCATATATCAATTTATGTACGCAAAACTTGTTCTTTTGCTTTCTTGTTGTTGAACAAGGGATGGAGTCATTGCATTTAATAAGTCATTTATAGATAGTTTCAAACAAGTTTTGAAGGGAAGAAGATTGGAGAGGACTGATCGCAATATATAGAGAGACAGTTTTATATATAACTTGTAATAATGTAGGTTAATTACTTTGTAAGTTAATATTTTTCCAATAGAGTTAAAAATGAATATTTATCTTAAGAAAAAAAGATGCAAGGAAACAAATTTGCTCCGTATAAGTCAAAATCAACTTAGTCCTAAAAGCCCAGATTCTCACCACTAATTTATCACATGAGATATCAGCCAGATTCATGATTTGTGAAAATGAAAAAAATATATCAACTTCATGAAGTAGCAGGGGAACTGGTTTCTTAGGTATCACACCTGGCACACTCTTGATGGGATGAGGATTCGTCATTCATAACAAACTGGGGCCTGAAAATGAGAACTGACTGATAAAAAACTAAAAAATGATACCATGGTTGGTCATAGATGTCTGTCATCTGCACCATCATAAAAACATGTCACCAACGCTGCTTGTTACAATCACCAGTGGATGATTGATATTTAAAGCTCAGTTTCCATGAAGGCTCCAGAATAGCACAGCAAACTATAGAGGAACTAAATTATACGCATTGGGGTCATCTGAGGATGACTTAAGCTTTAGTTCCATTGACATTGGAACTACTGTAATGGTAAACAAATTGCAAAATCCACCCATTCCTAAACACTTGACTTTGAGCTCCTTCTGTACACTGAACAGTTGGATCATTACTAATATGATAATGAGTTGAGTTGGATCCATTACCAATGTGTATGGCTTAGGTTTAGGAAGTTATGAT
Coding sequences of Glyma03g29301
>Glyma03g29301.1   sequence type=CDS   gene model=Glyma03g29301   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTGGAAGCAGCAGAAGCAGACTTCCCTTCACCGGAGGAGCCTCATCGTCAGCGCCGCTCCATCTGCTCCAACTGCGACCGTCCCAGTCGCGTCTGTCTCTGCCACGCGCTTCCACTTCCTCCAATCCAAACCACCACCCAAATCCTCATCATCCAACACCCCCACGAGGCCCGCCACAAGCTCTCCACCACCCCCATCCTCACCAAGTCCCTCCTCCGCGCCTCCTCCCTCACCGCCCGCCGCCTCCGCCGCGGCCTCTCCCCCCTCCTCGACCGCTCTCCCCCCGCCCTCTACCTCTTCCCCTCCTCCGCCTCCGCCCTCCACATCTCCTCCCTCCGCCCCTCCTCTGGCCTCGTCCTCATCGCCTTCGACGCCACGTGGCAGCACGCGAGGGAAATGGTGAGCGCCAGCGAGGAGTTCCTTTCTAAATTCGCAACTAGGGTTTGTTTGGGCATCGATGAGAGCTCCAGCGGCGGGAGCATTTACGATTCCGAGTTGGTTTTAAGGAAGGAGCCTTCTGCCGGGTGCGTGAGTACCATGGAGGCTGTGGCTAGGGCACTGCGCGTGCTCGAGCCCAATGGGGTCGAGATTGAAGCGAGGTTGGTTGGGGTTTTGAGGGAGATGGTCAGGTTACAGGCTGGGTTTTTGAAGCCCGTGAAGCCCAGGCCTAAGTTGTTGAAGAAGAAGGAAAAGAATGAGGGTTCTGATCAAGTTTCTTCATGA

>Glyma03g29301.2   sequence type=CDS   gene model=Glyma03g29301   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTGGAAGCAGCAGAAGCAGACTTCCCTTCACCGGAGGAGCCTCATCGTCAGCGCCGCTCCATCTGCTCCAACTGCGACCGTCCCAGTCGCGTCTGTCTCTGCCACGCGCTTCCACTTCCTCCAATCCAAACCACCACCCAAATCCTCATCATCCAACACCCCCACGAGGCCCGCCACAAGCTCTCCACCACCCCCATCCTCACCAAGTCCCTCCTCCGCGCCTCCTCCCTCACCGCCCGCCGCCTCCGCCGCGGCCTCTCCCCCCTCCTCGACCGCTCTCCCCCCGCCCTCTACCTCTTCCCCTCCTCCGCCTCCGCCCTCCACATCTCCTCCCTCCGCCCCTCCTCTGGCCTCGTCCTCATCGCCTTCGACGCCACGTGGCAGCACGCGAGGGAAATGGTGAGCGCCAGCGAGGAGTTCCTTTCTAAATTCGCAACTAGGGTTTGTTTGGGCATCGATGAGAGCTCCAGCGGCGGGAGCATTTACGATTCCGAGTTGGTTTTAAGGAAGGAGCCTTCTGCCGGGTGCGTGAGTACCATGGAGGCTGTGGCTAGGGCACTGCGCGTGCTCGAGCCCAATGGGGTCGAGATTGAAGCGAGGTTGGTTGGGGTTTTGAGGGAGATGGTCAGGTTACAGGCTGGGTTTTTGAAGCCCGTGAAGCCCAGGCCTAAGTTGTTGAAGAAGAAGGAAAAGAATGAGGGTTCTGATCAAGTTTCTTCATGA

>Glyma03g29301.3   sequence type=CDS   gene model=Glyma03g29301   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGTGGAAGCAGCAGAAGCAGACTTCCCTTCACCGGAGGAGCCTCATCGTCAGCGCCGCTCCATCTGCTCCAACTGCGACCGTCCCAGTCGCGTCTGTCTCTGCCACGCGCTTCCACTTCCTCCAATCCAAACCACCACCCAAATCCTCATCATCCAACACCCCCACGAGGCCCGCCACAAGCTCTCCACCACCCCCATCCTCACCAAGTCCCTCCTCCGCGCCTCCTCCCTCACCGCCCGCCGCCTCCGCCGCGGCCTCTCCCCCCTCCTCGACCGCTCTCCCCCCGCCCTCTACCTCTTCCCCTCCTCCGCCTCCGCCCTCCACATCTCCTCCCTCCGCCCCTCCTCTGGCCTCGTCCTCATCGCCTTCGACGCCACGTGGCAGCACGCGAGGGAAATGGTGAGCGCCAGCGAGGAGTTCCTTTCTAAATTCGCAACTAGGGTTTGTTTGGGCATCGATGAGAGCTCCAGCGGCGGGAGCATTTACGATTCCGAGTTGGTTTTAAGGAAGGAGCCTTCTGCCGGGTGCGTGAGTACCATGGAGGCTGTGGCTAGGGCACTGCGCGTGCTCGAGCCCAATGGGGTCGAGATTGAAGCGAGGTTGGTTGGGGTTTTGAGGGAGATGGTCAGGTTACAGGCTGGGTTTTTGAAGCCCGTGAAGCCCAGGCCTAAGTTGTTGAAGAAGAAGGAAAAGAATGAGGGTTCTGATCAAGTTTCTTCATGA
Predicted protein sequences of Glyma03g29301
>Glyma03g29301.1   sequence type=predicted peptide   gene model=Glyma03g29301   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVEAAEADFPSPEEPHRQRRSICSNCDRPSRVCLCHALPLPPIQTTTQILIIQHPHEARHKLSTTPILTKSLLRASSLTARRLRRGLSPLLDRSPPALYLFPSSASALHISSLRPSSGLVLIAFDATWQHAREMVSASEEFLSKFATRVCLGIDESSSGGSIYDSELVLRKEPSAGCVSTMEAVARALRVLEPNGVEIEARLVGVLREMVRLQAGFLKPVKPRPKLLKKKEKNEGSDQVSS*

>Glyma03g29301.2   sequence type=predicted peptide   gene model=Glyma03g29301   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVEAAEADFPSPEEPHRQRRSICSNCDRPSRVCLCHALPLPPIQTTTQILIIQHPHEARHKLSTTPILTKSLLRASSLTARRLRRGLSPLLDRSPPALYLFPSSASALHISSLRPSSGLVLIAFDATWQHAREMVSASEEFLSKFATRVCLGIDESSSGGSIYDSELVLRKEPSAGCVSTMEAVARALRVLEPNGVEIEARLVGVLREMVRLQAGFLKPVKPRPKLLKKKEKNEGSDQVSS*

>Glyma03g29301.3   sequence type=predicted peptide   gene model=Glyma03g29301   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEVEAAEADFPSPEEPHRQRRSICSNCDRPSRVCLCHALPLPPIQTTTQILIIQHPHEARHKLSTTPILTKSLLRASSLTARRLRRGLSPLLDRSPPALYLFPSSASALHISSLRPSSGLVLIAFDATWQHAREMVSASEEFLSKFATRVCLGIDESSSGGSIYDSELVLRKEPSAGCVSTMEAVARALRVLEPNGVEIEARLVGVLREMVRLQAGFLKPVKPRPKLLKKKEKNEGSDQVSS*






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