Glyma03g29280 - SoyBase

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Report for Sequence Feature Glyma03g29280

Feature Type:	gene_model
Chromosome:	Gm03
Start:	37273383
stop:	37286728
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g29280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41740	AT	Annotation by Michelle Graham. TAIR10: villin 2 \| chr2:17410962-17416878 REVERSE LENGTH=976	SoyBase	E_val: 0	ISS
GO:0006598	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0009698	GO-bp	Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0048523	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of cellular process	SoyBase	N/A	ISS
GO:0051017	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin filament bundle assembly	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: actin binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0443	KOG	Actin regulatory proteins (gelsolin/villin family)	JGI		ISS
PTHR11977	Panther	VILLIN	JGI		ISS
PTHR11977:SF9	Panther	FLIGHTLESS-1-RELATED	JGI		ISS
PF00626	PFAM	Gelsolin repeat	JGI		ISS
PF02209	PFAM	Villin headpiece domain	JGI		ISS
UniRef100_I1JNC7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNC7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O81644	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Villin-2 n=2 Tax=Arabidopsis thaliana RepID=VILI2_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g29280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29280

Paralog	Evidence	Comments
Glyma19g32010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g136500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g29280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g29280

Limit To All Plant Sequences

>Glyma03g29280.1   sequence type=CDS   gene model=Glyma03g29280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAGTGCTACAAAAGTGTTGGATCCAGCATTCCAGGGAGTTGGTCAAAAAGTAGGGACTGAAATATGGAGGATTGAGGATTTTCAGCCAGTTCCATTGCCCAGACCTGATTATGGGAAATTCTACATGGGAGATTCTTACATCATCTTGCAGACAACACAAGGCAAAGGAAGTGCTTATTTGTATGATATTCACTTCTGGATTGGAAAGGATACAAGTCAGGATGAGGCTGGAACAGCAGCCATTAAAACTGTTGAACTCGATGCGTCTCTTGGAGGACGTGCAGTGCAACACAGGGAAATTCAAGGGCATGAATCCGACAAGTTTTTGTCATACTTTAAGCCATGTATAATACCATTAGAGGGAGGTGTTGCATCGGGATTTAAAAAACCTGAAGAAGAGGAGTTTGAAACACGTTTGTATGTATGCAGAGGAAAAAGAGTTGTCAGAATAAAACAGGTTCCTTTTGCACGGTCTTCACTGAATCATGATGATGTATTCATCCTAGACACTCAGAATAAGATTTATCAATTCAATGGTGCAAACTCCAATATCCAGGAAAGAGCCAAGGCTCTGGAAGTTATTCAGTTGTTGAAGGAAAAGTATCATGAGGGAAAATGCGACGTTGCAATTGTTGATGATGGAAAGCTGGATACTGAGTCAGACTCAGGTGAATTTTGGGTTCTCTTTGGTGGTTTTGCTCCCATTGGGAAGAAGATAATTAGTGAGGATGATATTGTTCCAGAGACCATTCCTGCTCAACTCTATAGTATTGCTGATGGTGAGGCCAAGCCTGTGGAAGGTGAACTTTCAAAATCACTGCTGGAGAACTACAAATGCTATCTATTGGACTGTGGAGCTGAGGTATTTGTCTGGGTTGGCCGGGTAACACAAGTTGAAGAACGAAAAGCAGCATGTCAAGCAGCTGAGGAGTTTCTCACAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATTATTCAAGGTTATGAGACACATTCGTTTAAGTCCAACTTTGATTCTTGGCCATCAGGATCTGCTACTACTGGTGCTGATGAAGGAAGAGGAAAAGTTGCAGCTTTGCTTAAGCAACAAGGTATGGGTGTGAAAGGGGTGACAAAAACTACCTCAGTTGTTGAGGAAATTCCACCTCTACTTGAAGGAGGTGGAAAGATGGAGGTATGGCAAATCAATGGAAGTGCTAAGACTCCATTACCTAAGGAGGATATCGGTAAATTTTATAGTGGAGATTGTTACATAGTACTGTACACTTATCACTCTAGTGAGAGGAAGGAGGACTACTACTTGTGTTGTTGGTTTGGAAAAGACAGCACTGAGGAGGACCAAAGAATGGCTATTCGATTGGCTAACACAATGTTCAACTCATTAAAGGGTAGACCTGTTCAGGGTCGCATATTTGATGGTAAAGAGCCACCACAGTTTATTGTTCTTTTCCATCCAATGGTGGTCCTCAAGGGAGGCTTGAGCTCTGGTTACAAAAAATTGATAGCAGATAAAGGTTTGCCAGATGAGACATACACAGCAGAGAGTGTTGCATTTATTCGAATTTCTGGAACATCCACTCATAATAATAAAGTGGTGCAAGTAGATGCAGTGGCAGCATTGCTGAATTCTACCGAGTGTTTTGTCCTGCAATCTGGCTCAGCTGTTTTTACATGGCATGGGAATCAATGTTCCCTTGAGCAGCAGCAGCTTGCTGCAAAAGTTGCTGAATTTTTAAGGCCAGGAGTTGCTTTAAAGCTTGCTAAAGAAGGAACAGAAACCTCAACTTTCTGGTTTGCACTTGGAGGGAAACAAAGTTACAACAACAAAAAAGTCACTAATGACATTGTCAGAGACCCCCATTTGTTCACTTTCTCTTTTAATAGAGGAAAGTTACAGGTAGAGGAGGTTTACAACTTTTCCCAAGATGATTTGTTAACAGAGGATATCCTGATCCTTGACACACACGCAGAAGTGTTTGTATGGATTGGTCAGTGTGTGGACCCAAAAGAAAAGCAAAATGCTTTTGAAATTGCCCAGAAATACATAGATAAGGCTGCATCTCTGGAGGGACTATCTCCTCATGTACCACTATACAAAGTAACAGAAGGGAATGAACCTTGCTTTTTCACAACATACTTTTCTTGGGATCATACAAAAGCTATGGTTCCAGGAAACTCATTCCAGAAAAAGGTGACATTACTCTTTGGAATTGGCCATCCTGTAGAGGAAAAGTCTAATGGGTCAAGTCAAGGAGGGGGACCAAGACAAAGAGCAGAAGCTTTGGCTGCCTTAAATAATGCATTCAATTCATCTCCTGAGGCAACATCCAGTGCGGATAAGTCGAATGGGCTAAGTCGAGGAGGACCAAGACAAAGGGCTGAAGCCTTAGCAGCCTTAAACTCTGCATTTAATTCATCATCTGGAACCAAAGTTTATACTCCTAGGCCATCTGGAAGAGGTCAAGGATCACAAAGAGCCGCCGCAGTAGCTGCTCTCTCTTCAGTTCTTACTGCTGAAAAGAAGAAAACTTCACCTGAAACTTCTCCTGTGGCTAGCACTAGTCCTGTAGTGGAGAATAGCAACTTTGATACTAAAAGTGAAAGTGCCCCTTCTGAAAAGGAAATTGTTGAAGAAGTTACAGAAGTCAAGGAGACAGAAGTTGTTGCCCTTGAAACTGGTACCAATGGGGATTCAGAACAACCAAAACAAGAAAATGTGGAGGATGGAGGAAATGACAGTGAAAATAATAATCAAAATTTCTTCAGTTATGAGCAGTTAAAGACCAAATCTGGTAGTGTTGTGTCTGGAATTGATCTTAAACGGAGAGAGGCCTATCTGTCAGACAAAGAGTTCCAAGCTGTATTTGGAATGGCCAAAGATGCATTCTCCAAGTTGCCAAGATGGAAGCAAGACATGCTGAAAAGAAAAGTGGATTTGTTCTAG

Predicted protein sequences of Glyma03g29280

Limit To All Plant Sequences

>Glyma03g29280.1   sequence type=predicted peptide   gene model=Glyma03g29280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSATKVLDPAFQGVGQKVGTEIWRIEDFQPVPLPRPDYGKFYMGDSYIILQTTQGKGSAYLYDIHFWIGKDTSQDEAGTAAIKTVELDASLGGRAVQHREIQGHESDKFLSYFKPCIIPLEGGVASGFKKPEEEEFETRLYVCRGKRVVRIKQVPFARSSLNHDDVFILDTQNKIYQFNGANSNIQERAKALEVIQLLKEKYHEGKCDVAIVDDGKLDTESDSGEFWVLFGGFAPIGKKIISEDDIVPETIPAQLYSIADGEAKPVEGELSKSLLENYKCYLLDCGAEVFVWVGRVTQVEERKAACQAAEEFLTSQKRPKSTRITRIIQGYETHSFKSNFDSWPSGSATTGADEGRGKVAALLKQQGMGVKGVTKTTSVVEEIPPLLEGGGKMEVWQINGSAKTPLPKEDIGKFYSGDCYIVLYTYHSSERKEDYYLCCWFGKDSTEEDQRMAIRLANTMFNSLKGRPVQGRIFDGKEPPQFIVLFHPMVVLKGGLSSGYKKLIADKGLPDETYTAESVAFIRISGTSTHNNKVVQVDAVAALLNSTECFVLQSGSAVFTWHGNQCSLEQQQLAAKVAEFLRPGVALKLAKEGTETSTFWFALGGKQSYNNKKVTNDIVRDPHLFTFSFNRGKLQVEEVYNFSQDDLLTEDILILDTHAEVFVWIGQCVDPKEKQNAFEIAQKYIDKAASLEGLSPHVPLYKVTEGNEPCFFTTYFSWDHTKAMVPGNSFQKKVTLLFGIGHPVEEKSNGSSQGGGPRQRAEALAALNNAFNSSPEATSSADKSNGLSRGGPRQRAEALAALNSAFNSSSGTKVYTPRPSGRGQGSQRAAAVAALSSVLTAEKKKTSPETSPVASTSPVVENSNFDTKSESAPSEKEIVEEVTEVKETEVVALETGTNGDSEQPKQENVEDGGNDSENNNQNFFSYEQLKTKSGSVVSGIDLKRREAYLSDKEFQAVFGMAKDAFSKLPRWKQDMLKRKVDLF*

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