Glyma03g29250 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma03g29250

Feature Type:	gene_model
Chromosome:	Gm03
Start:	37232629
stop:	37239888
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g29250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41720	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr2:17403744-17407127 REVERSE LENGTH=822	SoyBase	E_val: 0	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF165	Panther	EMB2654 (EMBRYO DEFECTIVE 2654)	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7KTI0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7KTI0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337AA4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337AA4 related cluster n=1 Tax=unknown RepID=UPI0002337AA4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g29250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29250

Paralog	Evidence	Comments
Glyma19g31971	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g136200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g29250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g29250

Limit To All Plant Sequences

>Glyma03g29250.2   sequence type=transcript   gene model=Glyma03g29250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGATTTCTCACAAAAATAAAATAAAATAAATAAAAAAATCTCATTCCCGCAAGCGCGGTTATCCTCAACTCACTCTTCCAACCACGCTCACTCCCGCGTCCTCTTCGATGGCCAGCACCGCAAATCACTGTCTCCAACTCGCCGGCGCCACCGAGTCAACTCGTCGCTGGAGAATCTCCATTTCGTGCAAGAAGAAGTCGGACAAGTTAGCATTCAAGGAAACGAAGGAAGGCTTCGTGGACTACGACAGAGGCCAGCACGAGGTCTCCACGAAAATATCCGGCCTCCGCAAGGACGACATCGCCGCCCGATATCGCCTCCGCGTCGCCGGAAACCGCTTCCAGATGGACTGGACGGTGTCGGAGGTCGCCGAACTTGTCCTCTCCCTCAACCTCTCCGACGACGACGACGTCGACGGCCTGCTCAACCGCTGGGTTGGCCGCTTCGCGCGCAAGAATTTCCCCTTCCTTATCAAGGAGTTGACGCAGCGAGGGTCCATTGAACACTGTAACCGCGTGTTCCGGTGGTTGAAGAACCAGAAGAACTACCGTGCGCGCAATGATATATACAATATGATGATTAGGTTGCACGCCAGGCACAATCGAACGGACCAGGCGCGTGGATTGTTTTTTGAGATGCAGGAATGGAGGTGTAAACCTGATGTCGAGACTTACAATGCTATTATTAATGCGCATGGTCGGGCTGGACAGTGGCGTTGGGCTATGAATATCATGGATGACATGCTGCGTGCAGCTATTCCACCAAGTCGGTCAACTTATAACAACTTAATAAACGCTTGTGGATCTAGTGGGAATTGGAAAGAAGCACTTAATGTTTGCAAGAAAATGACAGAGAATGGTGTTGGGCCTGATCTTGTTACTCACAATATTATTCTATCTGCATTTAAAAGTGGGGCTCAGTATTCAAAAGCTTTGTCTTATTTTGAACTAATGAAGGGAACTCATATTCGTCCTGACACAACTACACTTAATATTGTTATCCATTGTCTAGTAAAACTTAGGCAATATGACAAAGCTATTGAAATTTTTAATTCCATGAGGGAGAAGAAGTCGGAATGTACCCCTGATGTTGTTACATTCACTAGTATCATTCACCTGTATTCTGTGTGTGGGCAAGTTGAAAATTGTGAGGCTGCATTTAATATGATGATTGCAGAAGGGCTGAAACCTAATATAGTCTCATATAATGCACTCATAGGTGCATATGCTGCTCGTGGTATGGACAATGAGGCGCATTTGTTTTTCAATGAGATAAAACAAAATGGCTTCCGCCCTGATATTGTATCGTATACATCTCTCCTTAATGCTTATGGAAGGTCACAAAAGCCCCATAAAGCTAGACAAATATTTGATAGGATGAAGAGAAACAAGTTGAAGCCAAATCTTGTCAGTTACAATGCGCTGATTGATGCCTATGGATCTAATGGTTTGCTGGCAGATGCAATTAAAATCTTGCGAGAAATGGAACAAGAAGGAATTCAGCCAAATGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGACGATGCAGTCGAAAGGTGAAGATTGACACAGTGCTAACAGCAGCTGAGATGCGAGGAATTAAATTAAACACAGTTGCATATAATGCAGCTATAGGAAGCTGTATGAATGTAGGGGAATATGACAAAGCTATAGGCTTGTATAAATCTATGAGGAAGAAAAAAATTAAAACTGATTCTGTTACTTACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATACGGCGAAGCCCTATCTTTTATGGAAGAAATTATGCATCTAAAACTTCCTTTGTCCAAAGAGGTCTACTCATCCGCCATATGCGCCTATAGCAAACAGGGCCAAATTGTAGAGGCAGAGTCTACATTCAACTTGATGAAATCATCTGGTTGCTACCCTGATGTGGTTACATACACCGCCATGCTTGATGCGTACAATGCAGCTGAGAATTGGGAGAAAGCTTATGCACTCTTTGAAGAAATGGAAGCAAGCAGCATCAAGCTAGATACTATTGCCTGTGCAGCTCTAATGAGATCTTTTAATAAAGGTGGCCAACCAGGAAGGGTTCTTAGTCTTGCAGAAAGTATGAGAGAAAAAGAAATTCCTTTCAGTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCATATTACAAGATTGGAGGACAGCTGTTGATATGATCAAGTACATAGAGCCCTCACTTCCTGTAATTTCATCCGGATGTTTGAATCAGTTCCTGCATTCTTTAGGAAAAAGTGGAAAGATTGAAACTATGTTGAAGTTATTCTTCAAAATGTTGGCATCAGGTGCCGATGTTAACTTAAACACTTACTCTATATTATTGAAGAACCTTTTATCATCTGGAAATTGGAGGAAGTATTTAGAGGTATTGCAATGGATGGAGGATGCCGGAATTCATCCATCAAAAGAAATGTACCATGATATATCCTCCTTTTCACAAAAATGCTGTGGCAATGAAAATGCTGCTGTCATAAGAGAAAGACTTGAATCCTTGAAAAGAGAATTCGGGGATCAAATTTCTACAAGCCAGCCCTGTGAATCTCTTGTCATGGAATCACATTCTTTTGCTTAGCTGTGACACGTTGTTCCAACTGCTGTGGGAGTTCTGCCTGTGAGATTTTTTTAAAGATTGAAGTTGAAACTCAACTTAATTTATTGGATCATACGCTACTCCTGTATATAGATTATTTTTCATATTATGCCTGCAATTTGTAATTCATCTCATCTTTCCTTCCTGTGTATATACTAGTACGTTCGGACTGTACTGTAAAATGTAAAGTCCAAGTGGGGTTACACTAAAGAATGTGTATAAACCTTATCAGTTCATGCTATCAATATAGTTGCTGTTGATGGCTCGCTCGCACTTTAAACTTTACAATGCATTTTAACGAAAACTACTGTATATTTC

Coding sequences of Glyma03g29250

Limit To All Plant Sequences

>Glyma03g29250.1   sequence type=CDS   gene model=Glyma03g29250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAGCACCGCAAATCACTGTCTCCAACTCGCCGGCGCCACCGAGTCAACTCGTCGCTGGAGAATCTCCATTTCGTGCAAGAAGAAGTCGGACAAGTTAGCATTCAAGGAAACGAAGGAAGGCTTCGTGGACTACGACAGAGGCCAGCACGAGGTCTCCACGAAAATATCCGGCCTCCGCAAGGACGACATCGCCGCCCGATATCGCCTCCGCGTCGCCGGAAACCGCTTCCAGATGGACTGGACGGTGTCGGAGGTCGCCGAACTTGTCCTCTCCCTCAACCTCTCCGACGACGACGACGTCGACGGCCTGCTCAACCGCTGGGTTGGCCGCTTCGCGCGCAAGAATTTCCCCTTCCTTATCAAGGAGTTGACGCAGCGAGGGTCCATTGAACACTGTAACCGCGTGTTCCGGTGGTTGAAGAACCAGAAGAACTACCGTGCGCGCAATGATATATACAATATGATGATTAGGTTGCACGCCAGGCACAATCGAACGGACCAGGCGCGTGGATTGTTTTTTGAGATGCAGGAATGGAGGTGTAAACCTGATGTCGAGACTTACAATGCTATTATTAATGCGCATGGTCGGGCTGGACAGTGGCGTTGGGCTATGAATATCATGGATGACATGCTGCGTGCAGCTATTCCACCAAGTCGGTCAACTTATAACAACTTAATAAACGCTTGTGGATCTAGTGGGAATTGGAAAGAAGCACTTAATGTTTGCAAGAAAATGACAGAGAATGGTGTTGGGCCTGATCTTGTTACTCACAATATTATTCTATCTGCATTTAAAAGTGGGGCTCAGTATTCAAAAGCTTTGTCTTATTTTGAACTAATGAAGGGAACTCATATTCGTCCTGACACAACTACACTTAATATTGTTATCCATTGTCTAGTAAAACTTAGGCAATATGACAAAGCTATTGAAATTTTTAATTCCATGAGGGAGAAGAAGTCGGAATGTACCCCTGATGTTGTTACATTCACTAGTATCATTCACCTGTATTCTGTGTGTGGGCAAGTTGAAAATTGTGAGGCTGCATTTAATATGATGATTGCAGAAGGGCTGAAACCTAATATAGTCTCATATAATGCACTCATAGGTGCATATGCTGCTCGTGGTATGGACAATGAGGCGCATTTGTTTTTCAATGAGATAAAACAAAATGGCTTCCGCCCTGATATTGTATCGTATACATCTCTCCTTAATGCTTATGGAAGGTCACAAAAGCCCCATAAAGCTAGACAAATATTTGATAGGATGAAGAGAAACAAGTTGAAGCCAAATCTTGTCAGTTACAATGCGCTGATTGATGCCTATGGATCTAATGGTTTGCTGGCAGATGCAATTAAAATCTTGCGAGAAATGGAACAAGAAGGAATTCAGCCAAATGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGACGATGCAGTCGAAAGGTGAAGATTGACACAGTGCTAACAGCAGCTGAGATGCGAGGAATTAAATTAAACACAGTTGCATATAATGCAGCTATAGGAAGCTGTATGAATGTAGGGGAATATGACAAAGCTATAGGCTTGTATAAATCTATGAGGAAGAAAAAAATTAAAACTGATTCTGTTACTTACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATACGGCGAAGCCCTATCTTTTATGGAAGAAATTATGCATCTAAAACTTCCTTTGTCCAAAGAGGTCTACTCATCCGCCATATGCGCCTATAGCAAACAGGGCCAAATTGTAGAGGCAGAGTCTACATTCAACTTGATGAAATCATCTGGTTGCTACCCTGATGTGGTTACATACACCGCCATGCTTGATGCGTACAATGCAGCTGAGAATTGGGAGAAAGCTTATGCACTCTTTGAAGAAATGGAAGCAAGCAGCATCAAGCTAGATACTATTGCCTGTGCAGCTCTAATGAGATCTTTTAATAAAGGTGGCCAACCAGGAAGGGTTCTTAGTCTTGCAGAAAGTATGAGAGAAAAAGAAATTCCTTTCAGTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCATATTACAAGATTGGAGGACAGCTGTTGATATGATCAAGTACATAGAGCCCTCACTTCCTGTAATTTCATCCGGATGTTTGAATCAGTTCCTGCATTCTTTAGGAAAAAGTGGAAAGATTGAAACTATGTTGAAGTTATTCTTCAAAATGTTGGCATCAGGTGCCGATGTTAACTTAAACACTTACTCTATATTATTGAAGAACCTTTTATCATCTGGAAATTGGAGGAAGTATTTAGAGGTGAAATACCAGTGTAGGACAATAACTACAAGCCCAGCCCAACAACACTATCAACAGGAAAAAAAACTGCCAACTTGA

>Glyma03g29250.2   sequence type=CDS   gene model=Glyma03g29250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAGCACCGCAAATCACTGTCTCCAACTCGCCGGCGCCACCGAGTCAACTCGTCGCTGGAGAATCTCCATTTCGTGCAAGAAGAAGTCGGACAAGTTAGCATTCAAGGAAACGAAGGAAGGCTTCGTGGACTACGACAGAGGCCAGCACGAGGTCTCCACGAAAATATCCGGCCTCCGCAAGGACGACATCGCCGCCCGATATCGCCTCCGCGTCGCCGGAAACCGCTTCCAGATGGACTGGACGGTGTCGGAGGTCGCCGAACTTGTCCTCTCCCTCAACCTCTCCGACGACGACGACGTCGACGGCCTGCTCAACCGCTGGGTTGGCCGCTTCGCGCGCAAGAATTTCCCCTTCCTTATCAAGGAGTTGACGCAGCGAGGGTCCATTGAACACTGTAACCGCGTGTTCCGGTGGTTGAAGAACCAGAAGAACTACCGTGCGCGCAATGATATATACAATATGATGATTAGGTTGCACGCCAGGCACAATCGAACGGACCAGGCGCGTGGATTGTTTTTTGAGATGCAGGAATGGAGGTGTAAACCTGATGTCGAGACTTACAATGCTATTATTAATGCGCATGGTCGGGCTGGACAGTGGCGTTGGGCTATGAATATCATGGATGACATGCTGCGTGCAGCTATTCCACCAAGTCGGTCAACTTATAACAACTTAATAAACGCTTGTGGATCTAGTGGGAATTGGAAAGAAGCACTTAATGTTTGCAAGAAAATGACAGAGAATGGTGTTGGGCCTGATCTTGTTACTCACAATATTATTCTATCTGCATTTAAAAGTGGGGCTCAGTATTCAAAAGCTTTGTCTTATTTTGAACTAATGAAGGGAACTCATATTCGTCCTGACACAACTACACTTAATATTGTTATCCATTGTCTAGTAAAACTTAGGCAATATGACAAAGCTATTGAAATTTTTAATTCCATGAGGGAGAAGAAGTCGGAATGTACCCCTGATGTTGTTACATTCACTAGTATCATTCACCTGTATTCTGTGTGTGGGCAAGTTGAAAATTGTGAGGCTGCATTTAATATGATGATTGCAGAAGGGCTGAAACCTAATATAGTCTCATATAATGCACTCATAGGTGCATATGCTGCTCGTGGTATGGACAATGAGGCGCATTTGTTTTTCAATGAGATAAAACAAAATGGCTTCCGCCCTGATATTGTATCGTATACATCTCTCCTTAATGCTTATGGAAGGTCACAAAAGCCCCATAAAGCTAGACAAATATTTGATAGGATGAAGAGAAACAAGTTGAAGCCAAATCTTGTCAGTTACAATGCGCTGATTGATGCCTATGGATCTAATGGTTTGCTGGCAGATGCAATTAAAATCTTGCGAGAAATGGAACAAGAAGGAATTCAGCCAAATGTTGTCTCAATATGCACACTCTTGGCTGCCTGTGGACGATGCAGTCGAAAGGTGAAGATTGACACAGTGCTAACAGCAGCTGAGATGCGAGGAATTAAATTAAACACAGTTGCATATAATGCAGCTATAGGAAGCTGTATGAATGTAGGGGAATATGACAAAGCTATAGGCTTGTATAAATCTATGAGGAAGAAAAAAATTAAAACTGATTCTGTTACTTACACTGTGTTGATAAGTGGTTGTTGTAAGATGTCAAAATACGGCGAAGCCCTATCTTTTATGGAAGAAATTATGCATCTAAAACTTCCTTTGTCCAAAGAGGTCTACTCATCCGCCATATGCGCCTATAGCAAACAGGGCCAAATTGTAGAGGCAGAGTCTACATTCAACTTGATGAAATCATCTGGTTGCTACCCTGATGTGGTTACATACACCGCCATGCTTGATGCGTACAATGCAGCTGAGAATTGGGAGAAAGCTTATGCACTCTTTGAAGAAATGGAAGCAAGCAGCATCAAGCTAGATACTATTGCCTGTGCAGCTCTAATGAGATCTTTTAATAAAGGTGGCCAACCAGGAAGGGTTCTTAGTCTTGCAGAAAGTATGAGAGAAAAAGAAATTCCTTTCAGTGATACCATATTTTTTGAAATGGTATCTGCCTGTAGCATATTACAAGATTGGAGGACAGCTGTTGATATGATCAAGTACATAGAGCCCTCACTTCCTGTAATTTCATCCGGATGTTTGAATCAGTTCCTGCATTCTTTAGGAAAAAGTGGAAAGATTGAAACTATGTTGAAGTTATTCTTCAAAATGTTGGCATCAGGTGCCGATGTTAACTTAAACACTTACTCTATATTATTGAAGAACCTTTTATCATCTGGAAATTGGAGGAAGTATTTAGAGGTATTGCAATGGATGGAGGATGCCGGAATTCATCCATCAAAAGAAATGTACCATGATATATCCTCCTTTTCACAAAAATGCTGTGGCAATGAAAATGCTGCTGTCATAAGAGAAAGACTTGAATCCTTGAAAAGAGAATTCGGGGATCAAATTTCTACAAGCCAGCCCTGTGAATCTCTTGTCATGGAATCACATTCTTTTGCTTAG

Predicted protein sequences of Glyma03g29250

Limit To All Plant Sequences

>Glyma03g29250.1   sequence type=predicted peptide   gene model=Glyma03g29250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTANHCLQLAGATESTRRWRISISCKKKSDKLAFKETKEGFVDYDRGQHEVSTKISGLRKDDIAARYRLRVAGNRFQMDWTVSEVAELVLSLNLSDDDDVDGLLNRWVGRFARKNFPFLIKELTQRGSIEHCNRVFRWLKNQKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSDTIFFEMVSACSILQDWRTAVDMIKYIEPSLPVISSGCLNQFLHSLGKSGKIETMLKLFFKMLASGADVNLNTYSILLKNLLSSGNWRKYLEVKYQCRTITTSPAQQHYQQEKKLPT*

>Glyma03g29250.2   sequence type=predicted peptide   gene model=Glyma03g29250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASTANHCLQLAGATESTRRWRISISCKKKSDKLAFKETKEGFVDYDRGQHEVSTKISGLRKDDIAARYRLRVAGNRFQMDWTVSEVAELVLSLNLSDDDDVDGLLNRWVGRFARKNFPFLIKELTQRGSIEHCNRVFRWLKNQKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNKGGQPGRVLSLAESMREKEIPFSDTIFFEMVSACSILQDWRTAVDMIKYIEPSLPVISSGCLNQFLHSLGKSGKIETMLKLFFKMLASGADVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDAGIHPSKEMYHDISSFSQKCCGNENAAVIRERLESLKREFGDQISTSQPCESLVMESHSFA*

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