Glyma03g29150 - SoyBase

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Report for Sequence Feature Glyma03g29150

Feature Type:	gene_model
Chromosome:	Gm03
Start:	37095749
stop:	37103423
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g29150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G21090	AT	Annotation by Michelle Graham. TAIR10: ABC-2 type transporter family protein \| chr3:7391497-7394933 REVERSE LENGTH=691	SoyBase	E_val: 0	ISS
GO:0009062	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
GO:0042626	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances	SoyBase	N/A	ISS
KOG0061	KOG	Transporter, ABC superfamily (Breast cancer resistance protein)	JGI		ISS
PTHR19241	Panther	ATP-BINDING CASSETTE TRANSPORTER	JGI		ISS
PTHR19241:SF20	Panther	ABC TRANSPORTER	JGI		ISS
PF00005	PFAM	ABC transporter	JGI		ISS
PF01061	PFAM	ABC-2 type transporter	JGI		ISS
UniRef100_B9II87	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: White-brown-complex ABC transporter family n=1 Tax=Populus trichocarpa RepID=B9II87_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1JNB6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNB6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g29150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29150

Paralog	Evidence	Comments
Glyma19g31926	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g135200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g29150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g29150

Limit To All Plant Sequences

>Glyma03g29150.1   sequence type=CDS   gene model=Glyma03g29150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATGATATGGGAAGATGTAACAGTTGAGAGGCCTGAAAGTTTTGGAGAACACAATAACAATAAGAAGTTAATGCTGAATGGAATCACTGGTTTTGCTGAACCTGCTAGGATTATGGCTGTTATGGGTCCTTCTGGCTGCGGCAAAACTACCTTTCTTGACTCTTTCACTGGAAAACTTGCTGCAAATGTTGTAGTAACCGGCAACATTCTAATCAATGGGAAGAAGAAAAGCTTTTATTCCAAAGAAGTGTCCTACGTGGCACAAGAGGAACTTTTCTTGGGTACTTTGACTGTAAAAGAGACCCTCACATACTCAGCAAACATAAGGCTTCCTTCTAAAATGACCAAAGAAGAGATAAACAAAGTGGTGGAAAATACCATAATGGAAATGGGTCTGGAAGATTGTGCAGATACTAGGATTGGAAATTGGCATTGTAGGGGTATTAGTAATGGTGAAAAGAAGAGACTTAGCATTGGACTTGAAATTCTGACACAACCATATGTCTTACTTCTTGATGAACCTACTACTGGACTTGATAGTGCCTCAGCTTTCTATGTGGTTCAATCTCTATGCCACATTGCTCACAGTGGAAAGATAGTTATCTGTTCTATTCACCAGCCCAGTAGTGAGATTTTTAGTCTGTTTGATGATTTGCTTTTGCTCTCTAGTGGGGAAACTGTTTATTTTGGAGAAGCAAAGATGGCTCTAAAGTTTTTTGCCGATGCAGGTTTCCCCTGCCCTACTAGAAGAAATCCTTCAGATCATTTCCTTATGTGTATTAATTTGGACTTTGAGTTGATTACTGAAGCACTACAGAGGACACAGTTAAATTTGATACCAACAAATTCAACAATTGGAATGAGAACATCAGAGATCAGAAGGATACTTATTCAGAGTTACAAAAGTTCAAAGCTAATGATCGATGCAAGAAAAAGAATTGAACAACTGAAACCCAATGAAGAGCAAGAAATTAAGCCCTACATAGGTAGCAGTACCACATGGAGGAAGCAATTATATACATTGACTGAGAGATCTTTCCTAAACATGACTAGGGACATTGGTTACTACTGGCTGAGGATTGTATTCTACATACTGGTAGGAATTACTATTGGCACCCTCTTTTTTCATATTGGCACAGGAAACAACTCAATCTTGGCTAGAGGAAAGTGTGTATCATTCATCTATGGGTTCATGATTTGTTTGTCATGTGGAGGATTACCATTTTTCATTGAAGAATTGAAGGTTTTCTATGGTGAAAGGTCCAAAGGACATTATGGAGAGGCTGCATTTGTAGTGTCAAACATCATATCTTCATTCCCTTTCCTTGTTCTAACATCACTCTCCTCCGGAATAATCATTTACTTCATGGTGCAATTTCATCCGGGTTTATCTAATTGTGCATTTTTCTGTATCAACTTGTTCTGCTGCCTATCTGTTGTTGAGTGCTGCATCATGATTGTTGCCTCAGTGGTCCCCAATGTGCTGATGGGCATAGGAACAGGAACTGGTGTAATTGTCTTCATGATGATGCCCTCTCAAATATTCAGATCATTACCTGACATTCCAAAGTTCTTCTGGCGCTATCCCATGTCCTACCTCAGTTTTGCTGCTTGGGCAGTTCAGGGACAATACAAGAATGACATGCTGGGGGTTGAATTTGATCCTTTGCTGCCAGGAGATGTTAAAGTTAGTGGAGAACAAGTGCTATCATTGGTATTTGGTGTTCCATTGGATCATAACAAATGGTGGGACTTAACAGCATTGGCTACCTTATTATTAGTTCACAGATTGGTTCTTTACTTGGTGCTTCGGTTTGTCAAAAGAGCTCAATCACCTAAACTGTGGTTCTATGCCAAGAAAAGTTTACACTTTGCAGGAAGATGTTTCTTCAGTAAGAAGCCATCTATCTCTTCCAGGAAACAAGCTCAGCATCCATTATCATCTCAAGAGGGTCTAATGTCCCCAAACCTTGCAATATAA

Predicted protein sequences of Glyma03g29150

Limit To All Plant Sequences

>Glyma03g29150.1   sequence type=predicted peptide   gene model=Glyma03g29150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVMIWEDVTVERPESFGEHNNNKKLMLNGITGFAEPARIMAVMGPSGCGKTTFLDSFTGKLAANVVVTGNILINGKKKSFYSKEVSYVAQEELFLGTLTVKETLTYSANIRLPSKMTKEEINKVVENTIMEMGLEDCADTRIGNWHCRGISNGEKKRLSIGLEILTQPYVLLLDEPTTGLDSASAFYVVQSLCHIAHSGKIVICSIHQPSSEIFSLFDDLLLLSSGETVYFGEAKMALKFFADAGFPCPTRRNPSDHFLMCINLDFELITEALQRTQLNLIPTNSTIGMRTSEIRRILIQSYKSSKLMIDARKRIEQLKPNEEQEIKPYIGSSTTWRKQLYTLTERSFLNMTRDIGYYWLRIVFYILVGITIGTLFFHIGTGNNSILARGKCVSFIYGFMICLSCGGLPFFIEELKVFYGERSKGHYGEAAFVVSNIISSFPFLVLTSLSSGIIIYFMVQFHPGLSNCAFFCINLFCCLSVVECCIMIVASVVPNVLMGIGTGTGVIVFMMMPSQIFRSLPDIPKFFWRYPMSYLSFAAWAVQGQYKNDMLGVEFDPLLPGDVKVSGEQVLSLVFGVPLDHNKWWDLTALATLLLVHRLVLYLVLRFVKRAQSPKLWFYAKKSLHFAGRCFFSKKPSISSRKQAQHPLSSQEGLMSPNLAI*

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