Glyma03g29100 - SoyBase

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Report for Sequence Feature Glyma03g29100

Feature Type:	gene_model
Chromosome:	Gm03
Start:	37042897
stop:	37050718
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g29100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10310	AT	Annotation by Michelle Graham. TAIR10: P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain \| chr3:3190208-3195005 FORWARD LENGTH=922	SoyBase	E_val: 0	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006342	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin silencing	SoyBase	N/A	ISS
GO:0007018	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based movement	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003777	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0239	KOG	Kinesin (KAR3 subfamily)	JGI		ISS
PTHR24115	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24115:SF135	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00225	PFAM	Kinesin motor domain	JGI		ISS
PF00307	PFAM	Calponin homology (CH) domain	JGI		ISS
UniRef100_G7KTG9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinesin-like polypeptide n=1 Tax=Medicago truncatula RepID=G7KTG9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337AA2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337AA2 related cluster n=1 Tax=unknown RepID=UPI0002337AA2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g29100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29100

Paralog	Evidence	Comments
Glyma19g31910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g134900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g29100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g29100

Limit To All Plant Sequences

>Glyma03g29100.3   sequence type=transcript   gene model=Glyma03g29100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTAACTAACCTCAAATTAGAAATTCGGAGCTGCAATGATGACGGGTTGAGCCTTCCTGACGCCATATTGCATTCAGTGAAGTCTCCAACTGATGTTATGACCCTCATCAAACTTGGTGAGGTTAATCGTGCCGTCAGTTCGACTGCAATGAACAATAGGAGTAGTCGTTCCCACAGTGTGCTTACTGTGCATGTTAATGGCAAAGATACATCTGGGAGCTCCATTCGCAGCTGCTTGCACTTAGTAGACCTTGCTGGAAGTGAACGGGTAGACAAGTCCGAGGTTACAGGGGAAAGACTAAAGGAAGCACAGTTTATTAACAAGTCTCTTTCCTGTTTGGGAGATGTGATCACAGCCCTGGCTCAAAAGAATTCTCACATCCCTTATAGGAACAGCAAACTCACACTTCTTTTGCAGGACTCCTTAGGTGGGCATGCTAAAACATTGATGTTTGCTCATGTGAGTCCGGAATCAGATTCATTTGGTGAAACAATGAGTACTCTAAAGTTTGCTCAGCGGGTTTCCACTGTGGAACTGGGGGCAGCCCGTATGAACAAAGAAAGCAGCGAGGTTATGCATCTTAAAGAACAGGTTGAGAACCTTAAGATTGCATTGGCAGCCAAGGAAGCTCAGAGGGTAACGTTCCAAAGAATTAAAGAACCACACACTCCATCAGAGAAGTCAACACTGGTGTCTGAGAAAACTCCATTGCGCCCACGAAGACTTAGCATTGAGAACTGCAGCGCTGTAAAGACTGACAAACCCGTGAATCGTGAGGATAGAGGTGGAGTCAAATCACCACTTTTGTTACCTCGCTTGAGAAGATTAAGTTTGGAAGGTTCAAAAACTATCAAGAGAGATAGTCTACTACCAAAAGTATCAGATAATGCTGTAAGCAAAGCTTTACAGTACGAGCGAGTGTCTCAGCAGAAATATCACCCAATGCAAGATCCAGAATCAGTGTCAAAACTAAATGGCCATTTCAGCAGTGGCAATTCCAGGTCAGAGTTGCATGCCAGAACCCCTCAAAGTCCAACAAGCATTTCCTATCAAACGAGATTGATAAAAGTAAATGGTGGGATGCAAGTTCATCCTCTTAAACTGCCCAAAACACCTGAACCACCAGTGGTGGATGGAGGCGATGCACATGGTACTAAGGTGATGGGTAGCACAAATGGAAAAGGATCGCAGATAAGAAGATCCTTGAGAACAATTGGGAAACTGATAAATGGCCCTGATAAGAGGAGCCAACAAAATATGGTTGAAGTCAAGTCACCCGTCAAGGGCACTGGCTATACAAATCATCTTGTAAAATCACCAATTTCAGCTGTTGAGAAGACTAAAAGGAGGCAATCTCTAACGGGGATTCAACCACCACTGCCAAACAACTCCCGTAGAACTTCACTTGGAGGGAAGCCAGTAGTAGCATATGACAAGGACAGAAATGCTAGAACTCCTCCTCCTTCCCAATCAGACAGCAAGACTGCGAAACGGTGGCTGTAGATCATTGTCAGTGGTGCTTCGACTTGAAGCACGCCAACATTGCTCTGACTTAGTTTAGGACAAGCTCCATGTCAGTCGGAGAGTTTTTGGTTTTTGGATCAAGCAACAATGTACATAAACATAAAATCAAATTAAAAAAATTTCAAGTTCATGCATGCAGCTTAAGTTTTATACTCTAGCAACTTGCAAGGTTGTTTTACCAACAACAAGTGGTGATAACTTAACTATATCATGGACTCAAACAATCTTTT

Coding sequences of Glyma03g29100

Limit To All Plant Sequences

>Glyma03g29100.2   sequence type=CDS   gene model=Glyma03g29100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGATGGTTCAAGAAATAGGACTCATTTCAACATGGCTTCAAGAAAAGCTGAAGAATCTGCTTGGAGACGCTATGAGGCTACTCAGTGGCTAGAAAGCCAAGTGGGTCCTCTTGGTATACCAAACCAGCCTACAGAGACAGAACTCATTTCTTGCTTGAGAAATGGTTTGATTCTTTGCAATGCCATTAACAAGATTCATCCAGGAGCAGTGCCTAAGGTTGTCGTTGTGGATAATCAAGTGCCTTCACAATCACTTGCCTGGGATTCTCAGCCTTTGCCTGCCTATCAGTATTTTGAAAATGTACGCAATTTTCTGTTTGTGATGGAAGAATTAAAGCTTCCGGCTTTTGAAGTTTCTGATCTTGAAAGGGATAATCTAGAGATGGGATCGGCAGCAAAACTCGTTGATTGCATTTTGGCACTTAAATCATTTCAAGAGTTGAAGCAGATGAACAAACAGAATGGATACAACAAACACATAAAATCTCCTTTGCCTATGAGAATGCATTCAAGAGCAGCTGCATTCTCCTTTGATGCTTCTAGGCACTTGGATTTGTCTGCCACATTGGTAAAAATGCCTCCCGCTGAGAATAATTTTCCGAAAAGAGAAGCAGAGATTGTGGAATTACTTGCCAAGCAACTGGTTGACCTTATGTTTGATGCCAAAGAAAATATCGATGGAAACATCATTGCTTCTCTCCATAAAGAACACCTGGTAGCGGATCCAATAAAGGTATTTAATCAGATAATGGCATGTTGTAATGGGGAACAGCCACCTACAAATTTCAACGAGTTGCCATTGCTTCTAAAGGATTCTGTAAAAGAAAAGGGTAACTTACCACCTCATTCCATTTCAACACCTACGCAATCAGATGCTTTATCTGCTCCTGACAGTTCTAAGCATGGCGAAGCTTGCCTCAGAAAGTGCAAGTGCAATCAGGTGCATCTTTTAGACATGCAGGAAAAAGAACTTCTGGATCTCAAGGCTTTGAAGTTGAAAATTAAGAAAGAGTTTCAAGAGATACAGTCACAGTTTCAAGGTTTTTTTCATGATATTGGGAGTCAAATACAGGAGATGTCAACTAAAGCTCTTGGATATCACAAAGTAGTAGAAGAGAATAGGAAACTATACAACATGGTCCAAGATTTGAAAGGTAATATTCGAGTTTACTGCAGAATCAGGCCCTCATTCCGGGCTGAATCCAAGAATGTTGTTGATTTCATTGGGGAAGATGGTTCTCTATTCATTTTAGATCCAACAAAAACACTAAAAGATGGAAGGAAACTTTTTCAGTTTAATCAGGTTTTTGGTCCAATAGCTGGCCAAGATGATGTTTATAAGGATACTCAACCATTAATTAGATCTGTGATGGATGGGTACAATGTTTGTATTTTTGCTTATGGTCAAACTGGATCGGGGAAGACTTACACCATGAGTGGTCCTTCAGGTGGAGGGACATCAAAGGATATGGGAATCAATTATCTGGCACTTAATGATCTGTTTCAAATGTCTAATGAAAGGAAGGACATCATAAGCTATGACATTTATGTTCAAATGGTTGAGATTTACAATGAACAAGAAATTCGGAGCTGCAATGATGACGGGTTGAGCCTTCCTGACGCCATATTGCATTCAGTGAAGTCTCCAACTGATGTTATGACCCTCATCAAACTTGGTGAGGTTAATCGTGCCGTCAGTTCGACTGCAATGAACAATAGGAGTAGTCGTTCCCACAGTGTGCTTACTGTGCATGTTAATGGCAAAGATACATCTGGGAGCTCCATTCGCAGCTGCTTGCACTTAGTAGACCTTGCTGGAAGTGAACGGGTAGACAAGTCCGAGGTTACAGGGGAAAGACTAAAGGAAGCACAGTTTATTAACAAGTCTCTTTCCTGTTTGGGAGATGTGATCACAGCCCTGGCTCAAAAGAATTCTCACATCCCTTATAGGAACAGCAAACTCACACTTCTTTTGCAGGACTCCTTAGGTGGGCATGCTAAAACATTGATGTTTGCTCATGTGAGTCCGGAATCAGATTCATTTGGTGAAACAATGAGTACTCTAAAGTTTGCTCAGCGGGTTTCCACTGTGGAACTGGGGGCAGCCCGTATGAACAAAGAAAGCAGCGAGGTTATGCATCTTAAAGAACAGGTTGAGAACCTTAAGATTGCATTGGCAGCCAAGGAAGCTCAGAGGGTAACGTTCCAAAGAATTAAAGAACCACACACTCCATCAGAGAAGTCAACACTGGTGTCTGAGAAAACTCCATTGCGCCCACGAAGACTTAGCATTGAGAACTGCAGCGCTGTAAAGACTGACAAACCCGTGAATCGTGAGGATAGAGGTGGAGTCAAATCACCACTTTTGTTACCTCGCTTGAGAAGATTAAGTTTGGAAGGTTCAAAAACTATCAAGAGAGATAGTCTACTACCAAAAGTATCAGATAATGCTGTAAGCAAAGCTTTACAGTACGAGCGAGTGTCTCAGCAGAAATATCACCCAATGCAAGATCCAGAATCAGTGTCAAAACTAAATGGCCATTTCAGCAGTGGCAATTCCAGGTCAGAGTTGCATGCCAGAACCCCTCAAAGTCCAACAAGCATTTCCTATCAAACGAGATTGATAAAAGTAAATGGTGGGATGCAAGTTCATCCTCTTAAACTGCCCAAAACACCTGAACCACCAGTGGTGGATGGAGGCGATGCACATGGTACTAAGGTGATGGGTAGCACAAATGGAAAAGGATCGCAGATAAGAAGATCCTTGAGAACAATTGGGAAACTGATAAATGGCCCTGATAAGAGGAGCCAACAAAATATGGTTGAAGTCAAGTCACCCGTCAAGGGCACTGGCTATACAAATCATCTTGTAAAATCACCAATTTCAGCTGTTGAGAAGACTAAAAGGAGGCAATCTCTAACGGGGATTCAACCACCACTGCCAAACAACTCCCGTAGAACTTCACTTGGAGGGAAGCCAGTAGTAGCATATGACAAGGACAGAAATGCTAGAACTCCTCCTCCTTCCCAATCAGACAGCAAGACTGCGAAACGGTGGCTGTAG

>Glyma03g29100.3   sequence type=CDS   gene model=Glyma03g29100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCCTCATCAAACTTGGTGAGGTTAATCGTGCCGTCAGTTCGACTGCAATGAACAATAGGAGTAGTCGTTCCCACAGTGTGCTTACTGTGCATGTTAATGGCAAAGATACATCTGGGAGCTCCATTCGCAGCTGCTTGCACTTAGTAGACCTTGCTGGAAGTGAACGGGTAGACAAGTCCGAGGTTACAGGGGAAAGACTAAAGGAAGCACAGTTTATTAACAAGTCTCTTTCCTGTTTGGGAGATGTGATCACAGCCCTGGCTCAAAAGAATTCTCACATCCCTTATAGGAACAGCAAACTCACACTTCTTTTGCAGGACTCCTTAGGTGGGCATGCTAAAACATTGATGTTTGCTCATGTGAGTCCGGAATCAGATTCATTTGGTGAAACAATGAGTACTCTAAAGTTTGCTCAGCGGGTTTCCACTGTGGAACTGGGGGCAGCCCGTATGAACAAAGAAAGCAGCGAGGTTATGCATCTTAAAGAACAGGTTGAGAACCTTAAGATTGCATTGGCAGCCAAGGAAGCTCAGAGGGTAACGTTCCAAAGAATTAAAGAACCACACACTCCATCAGAGAAGTCAACACTGGTGTCTGAGAAAACTCCATTGCGCCCACGAAGACTTAGCATTGAGAACTGCAGCGCTGTAAAGACTGACAAACCCGTGAATCGTGAGGATAGAGGTGGAGTCAAATCACCACTTTTGTTACCTCGCTTGAGAAGATTAAGTTTGGAAGGTTCAAAAACTATCAAGAGAGATAGTCTACTACCAAAAGTATCAGATAATGCTGTAAGCAAAGCTTTACAGTACGAGCGAGTGTCTCAGCAGAAATATCACCCAATGCAAGATCCAGAATCAGTGTCAAAACTAAATGGCCATTTCAGCAGTGGCAATTCCAGGTCAGAGTTGCATGCCAGAACCCCTCAAAGTCCAACAAGCATTTCCTATCAAACGAGATTGATAAAAGTAAATGGTGGGATGCAAGTTCATCCTCTTAAACTGCCCAAAACACCTGAACCACCAGTGGTGGATGGAGGCGATGCACATGGTACTAAGGTGATGGGTAGCACAAATGGAAAAGGATCGCAGATAAGAAGATCCTTGAGAACAATTGGGAAACTGATAAATGGCCCTGATAAGAGGAGCCAACAAAATATGGTTGAAGTCAAGTCACCCGTCAAGGGCACTGGCTATACAAATCATCTTGTAAAATCACCAATTTCAGCTGTTGAGAAGACTAAAAGGAGGCAATCTCTAACGGGGATTCAACCACCACTGCCAAACAACTCCCGTAGAACTTCACTTGGAGGGAAGCCAGTAGTAGCATATGACAAGGACAGAAATGCTAGAACTCCTCCTCCTTCCCAATCAGACAGCAAGACTGCGAAACGGTGGCTGTAG

Predicted protein sequences of Glyma03g29100

Limit To All Plant Sequences

>Glyma03g29100.2   sequence type=predicted peptide   gene model=Glyma03g29100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDGSRNRTHFNMASRKAEESAWRRYEATQWLESQVGPLGIPNQPTETELISCLRNGLILCNAINKIHPGAVPKVVVVDNQVPSQSLAWDSQPLPAYQYFENVRNFLFVMEELKLPAFEVSDLERDNLEMGSAAKLVDCILALKSFQELKQMNKQNGYNKHIKSPLPMRMHSRAAAFSFDASRHLDLSATLVKMPPAENNFPKREAEIVELLAKQLVDLMFDAKENIDGNIIASLHKEHLVADPIKVFNQIMACCNGEQPPTNFNELPLLLKDSVKEKGNLPPHSISTPTQSDALSAPDSSKHGEACLRKCKCNQVHLLDMQEKELLDLKALKLKIKKEFQEIQSQFQGFFHDIGSQIQEMSTKALGYHKVVEENRKLYNMVQDLKGNIRVYCRIRPSFRAESKNVVDFIGEDGSLFILDPTKTLKDGRKLFQFNQVFGPIAGQDDVYKDTQPLIRSVMDGYNVCIFAYGQTGSGKTYTMSGPSGGGTSKDMGINYLALNDLFQMSNERKDIISYDIYVQMVEIYNEQEIRSCNDDGLSLPDAILHSVKSPTDVMTLIKLGEVNRAVSSTAMNNRSSRSHSVLTVHVNGKDTSGSSIRSCLHLVDLAGSERVDKSEVTGERLKEAQFINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGHAKTLMFAHVSPESDSFGETMSTLKFAQRVSTVELGAARMNKESSEVMHLKEQVENLKIALAAKEAQRVTFQRIKEPHTPSEKSTLVSEKTPLRPRRLSIENCSAVKTDKPVNREDRGGVKSPLLLPRLRRLSLEGSKTIKRDSLLPKVSDNAVSKALQYERVSQQKYHPMQDPESVSKLNGHFSSGNSRSELHARTPQSPTSISYQTRLIKVNGGMQVHPLKLPKTPEPPVVDGGDAHGTKVMGSTNGKGSQIRRSLRTIGKLINGPDKRSQQNMVEVKSPVKGTGYTNHLVKSPISAVEKTKRRQSLTGIQPPLPNNSRRTSLGGKPVVAYDKDRNARTPPPSQSDSKTAKRWL*

>Glyma03g29100.3   sequence type=predicted peptide   gene model=Glyma03g29100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLIKLGEVNRAVSSTAMNNRSSRSHSVLTVHVNGKDTSGSSIRSCLHLVDLAGSERVDKSEVTGERLKEAQFINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGHAKTLMFAHVSPESDSFGETMSTLKFAQRVSTVELGAARMNKESSEVMHLKEQVENLKIALAAKEAQRVTFQRIKEPHTPSEKSTLVSEKTPLRPRRLSIENCSAVKTDKPVNREDRGGVKSPLLLPRLRRLSLEGSKTIKRDSLLPKVSDNAVSKALQYERVSQQKYHPMQDPESVSKLNGHFSSGNSRSELHARTPQSPTSISYQTRLIKVNGGMQVHPLKLPKTPEPPVVDGGDAHGTKVMGSTNGKGSQIRRSLRTIGKLINGPDKRSQQNMVEVKSPVKGTGYTNHLVKSPISAVEKTKRRQSLTGIQPPLPNNSRRTSLGGKPVVAYDKDRNARTPPPSQSDSKTAKRWL*

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