Glyma03g29090 - SoyBase

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Report for Sequence Feature Glyma03g29090

Feature Type:	gene_model
Chromosome:	Gm03
Start:	37038139
stop:	37041086
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g29090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41640	AT	Annotation by Michelle Graham. TAIR10: Glycosyltransferase family 61 protein \| chr2:17360654-17362391 FORWARD LENGTH=500	SoyBase	E_val: 0	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG4698	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR20961	Panther	GLYCOSYLTRANSFERASE	JGI		ISS
PF04577	PFAM	Protein of unknown function (DUF563)	JGI		ISS
UniRef100_G7KTG8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase n=1 Tax=Medicago truncatula RepID=G7KTG8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JNB3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JNB3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g29090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g29090

Paralog	Evidence	Comments
Glyma19g31900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g29090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g134800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g29090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g29090

Limit To All Plant Sequences

>Glyma03g29090.1   sequence type=CDS   gene model=Glyma03g29090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCCACTATCACCGCTCCCATCAACCCAGAAAGGCCAACAACACAGACTCCATCATCAAAGACGAAGAGTCACAGAACAACATCACGTTGGATTGTTCATCCTCTGCTTACTACAAGAGAACAAGGCCCAAGTTGTTGTCTTTTCTCTTCCTCATCACCTTCCTCTCTTGCTGCTATGTTTTTGCTCCTCTTTTCCTTGGCCCTTCTTTCCCTCTATCTCTCTTGTACTCTCCCGCAACTGAAAATGATTTGAAACAAGATGGGGTTGGTGCTAATGATTCTCCATGCTCTTCTGTTTCTACTGGAACTATATGTTGTGATAGAAGTGGTTATCGTTCTGATGTCTGTGTGATGAAAGGTGATATAAGAACACACTCTGCTTCCTCTTCGGTCTTCCTCTACAATTCAAGGAGCAACAACAATGTTTCGAGAAATTTTGAAGAAGAACTCCAACATGAAAAGATCAAGCCGTATACTAGAAAATGGGAGACAAGTGTTATGGACACCATTGATGAATTAAACCTCATCTCGAAGAAAGTGAATTCAGGTAGTGTTGGAGGTTGTGATGTCCAACATGATGTTCCAGCAGTGTTCTTCTCAAATGGGGGCTACACTGGCAATGTTTATCACGAATTCAATGATGGAATCGTACCCTTATACATTACTTCTCAGCATTTCAAGAAGAAGGTTGTGTTTGTGATTCTTGAGTATCATAATTGGTGGATCATGAAGTATGGAGATATCCTTTCTCGCCTATCGGATTTTCCGCCAATCGATTTTCAAGGAGACAATAGAACTCATTGCTTCACAGAAGCAATAGTTGGTCTCAGAATCCATGATGAGCTAACTGTGGATTCTTCATTGATGAGGGGTAACAAGAGCATTGCTGATTTTAGAAACCTTTTGGATAAAGCTTATTGGCCAAGGATCAAGGGGCTGATTCGAGACGAAGAAAGGAAAGCACAAGAGAAATTGAGAGAACAAGTCTCTTCATCTGAATCATCAGAAGCCTCACAACAACAGTATATAACTATTAGGCAACAAGTGCAAGAAAATCCAATGAAGAAGCCTAAGTTGGTTATTCTTTCTAGAAGTGGTTCAAGAGCTATAACTAATGAGAATTTGCTTGTGAAGATGGCAAAGGAAATTGGGTTTTTGGTGCAAGTTTTGAAGCCCGACAGAACAACAGAAATGGCAAAGATTTATAGGACTCTCAATGCAAGTGATGTCATGATTGGTGTTCATGGAGCAGCTATGACACATTTTCTGTTCCTGAGACCTGGTTCTGTGTTTATTCAAGTGGTTCCTCTTGGTACCACATGGGCTGCAGAAACTTATTATGGGGAACCAGCAAGGAAGCTTGGATTGAAATACATTGGCTATCAAATTTTGCCTAGAGAGAGCACTTTGTATGAGAAATATGATAAAAATGATCCTATTCTGAGAGACCCTACAAGCATTAACAAGAAGGGGTGGGAATACACAAAGAAGATCTATCTTGACAGCCAAAATGTCATGTTAGACCTCAGAAGATTCAGAAAAAGGTTGCATCGAGCGTATGAGTATACACTCTCCAAATCAAAACTGAGTCTCCAACATCAACCAATGTGA

Predicted protein sequences of Glyma03g29090

Limit To All Plant Sequences

>Glyma03g29090.1   sequence type=predicted peptide   gene model=Glyma03g29090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVHYHRSHQPRKANNTDSIIKDEESQNNITLDCSSSAYYKRTRPKLLSFLFLITFLSCCYVFAPLFLGPSFPLSLLYSPATENDLKQDGVGANDSPCSSVSTGTICCDRSGYRSDVCVMKGDIRTHSASSSVFLYNSRSNNNVSRNFEEELQHEKIKPYTRKWETSVMDTIDELNLISKKVNSGSVGGCDVQHDVPAVFFSNGGYTGNVYHEFNDGIVPLYITSQHFKKKVVFVILEYHNWWIMKYGDILSRLSDFPPIDFQGDNRTHCFTEAIVGLRIHDELTVDSSLMRGNKSIADFRNLLDKAYWPRIKGLIRDEERKAQEKLREQVSSSESSEASQQQYITIRQQVQENPMKKPKLVILSRSGSRAITNENLLVKMAKEIGFLVQVLKPDRTTEMAKIYRTLNASDVMIGVHGAAMTHFLFLRPGSVFIQVVPLGTTWAAETYYGEPARKLGLKYIGYQILPRESTLYEKYDKNDPILRDPTSINKKGWEYTKKIYLDSQNVMLDLRRFRKRLHRAYEYTLSKSKLSLQHQPM*

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