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Report for Sequence Feature Glyma03g28950

Feature Type:gene_model
Chromosome:Gm03
Start:36907248
stop:36911654
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G20990AT Annotation by Michelle Graham. TAIR10: alpha carbonic anhydrase 4 | chr4:11219772-11221126 FORWARD LENGTH=267 SoyBaseE_val: 1.00E-94ISS
GO:0006730GO-bp Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0004089GO-mf Annotation by Michelle Graham. GO Molecular Function: carbonate dehydratase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG0382 KOG Carbonic anhydrase JGI ISS
PTHR18952Panther CARBONIC ANHYDRASE JGI ISS
PTHR18952:SF2Panther gb def: similar to carbonic anhydrase va, mitochondrial precursor, carbonic anhydrase v, JGI ISS
PF00194PFAM Eukaryotic-type carbonic anhydrase JGI ISS
UniRef100_G7KSM1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3 n=1 Tax=Medicago truncatula RepID=G7KSM1_MEDTR SoyBaseE_val: 8.00E-118ISS
UniRef100_UPI00023379B1UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023379B1 related cluster n=1 Tax=unknown RepID=UPI00023379B1 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma19g31710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g133600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma03g28950.2   sequence type=CDS   gene model=Glyma03g28950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCTCCCCACCAATCTCAAGTTCTTCTGTGTGTTTCTCCTAGTGCTTATTCTCTATTCCTCATCCTTCCTTGCATCAGCTGTTGATCCTAAGGCTGAAGATGAAGAATTTACCTTCGCTGAAGGAAGTATCAAAGGGCCAAAGAATTGGGGGCAGATCAACCCAAAATGGAAAGTATGTGGAGATGGAAAACTACAATCTCCCATTGATCTCTCTGACCAAATGGCTCAAGAGCTTCCTCAATTGGGTAAACTTGACAAAGTTTATAAACCAGCTCCTGTTGTCCTAATAAATAGGGGTCATGACATCATGCTGCAATGGAACGGGGATGCAGGCCAGCTTAACATAAATGGAACTTTCTACAATCTGATGCAATGTCATTGGCATACACCTTCAGAGCACACGTTGAATGGAACAAAGTTTGACTTGGAACTGCATGCAGTCCATAAAACCTCTAAAGGAGAGATTGCTGTTATTGGAATCTGGTATAAAATTGGCCATTCAGATCCCTTGCTTTCAAAGCTGCTCAATGACATAAAATCAATTAAGGACAAGAAGATAGACGTAGGAGTAATCAACCCAGGAGACATCATGTTTGAAACAAAAGAGTACTACAGATATGTTGGTTCTCTTACAACTCCACCATGCACTGAAGGTGTTGTTTGGACAATAGTGAAGGAGGTGAGGACAGTCTCAACCGAGCAATTGAATGCCTTGAAAGGAGCTGTCCATCATGGAGAGGAAAATGCAAGGCCAACACAAGAACTTGGTGGAAGACAAGTTTTGTTATATAAAGATGTGAATTGGGAATTGTGA

>Glyma03g28950.2   sequence type=predicted peptide   gene model=Glyma03g28950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALPTNLKFFCVFLLVLILYSSSFLASAVDPKAEDEEFTFAEGSIKGPKNWGQINPKWKVCGDGKLQSPIDLSDQMAQELPQLGKLDKVYKPAPVVLINRGHDIMLQWNGDAGQLNINGTFYNLMQCHWHTPSEHTLNGTKFDLELHAVHKTSKGEIAVIGIWYKIGHSDPLLSKLLNDIKSIKDKKIDVGVINPGDIMFETKEYYRYVGSLTTPPCTEGVVWTIVKEVRTVSTEQLNALKGAVHHGEENARPTQELGGRQVLLYKDVNWEL*







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