Report for Sequence Feature Glyma03g28950
Feature Type: gene_model
Chromosome: Gm03
Start: 36907248
stop: 36911654
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g28950
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G20990 AT
Annotation by Michelle Graham. TAIR10: alpha carbonic anhydrase 4 | chr4:11219772-11221126 FORWARD LENGTH=267
SoyBase E_val: 1.00E-94 ISS
GO:0006730 GO-bp
Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0009535 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane
SoyBase N/A ISS
GO:0004089 GO-mf
Annotation by Michelle Graham. GO Molecular Function: carbonate dehydratase activity
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
KOG0382
KOG
Carbonic anhydrase
JGI ISS
PTHR18952 Panther
CARBONIC ANHYDRASE
JGI ISS
PTHR18952:SF2 Panther
gb def: similar to carbonic anhydrase va, mitochondrial precursor, carbonic anhydrase v,
JGI ISS
PF00194 PFAM
Eukaryotic-type carbonic anhydrase
JGI ISS
UniRef100_G7KSM1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3 n=1 Tax=Medicago truncatula RepID=G7KSM1_MEDTR
SoyBase E_val: 8.00E-118 ISS
UniRef100_UPI00023379B1 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023379B1 related cluster n=1 Tax=unknown RepID=UPI00023379B1
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g28950
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma03g28950
Paralog Evidence Comments
Glyma19g31710 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g28950 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g133600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g28950
Coding sequences of Glyma03g28950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g28950.2 sequence type=CDS gene model=Glyma03g28950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCCTCCCCACCAATCTCAAGTTCTTCTGTGTGTTTCTCCTAGTGCTTATTCTCTATTCCTCATCCTTCCTTGCATCAGCTGTTGATCCTAAGGCTGAAGATGAAGAATTTACCTTCGCTGAAGGAAGTATCAAAGGGCCAAAGAATTGGGGGCAGATCAACCCAAAATGGAAAGTATGTGGAGATGGAAAACTACAATCTCCCATTGATCTCTCTGACCAAATGGCTCAAGAGCTTCCTCAATTGGGTAAACTTGACAAAGTTTATAAACCAGCTCCTGTTGTCCTAATAAATAGGGGTCATGACATCATGCTGCAATGGAACGGGGATGCAGGCCAGCTTAACATAAATGGAACTTTCTACAATCTGATGCAATGTCATTGGCATACACCTTCAGAGCACACGTTGAATGGAACAAAGTTTGACTTGGAACTGCATGCAGTCCATAAAACCTCTAAAGGAGAGATTGCTGTTATTGGAATCTGGTATAAAATTGGCCATTCAGATCCCTTGCTTTCAAAGCTGCTCAATGACATAAAATCAATTAAGGACAAGAAGATAGACGTAGGAGTAATCAACCCAGGAGACATCATGTTTGAAACAAAAGAGTACTACAGATATGTTGGTTCTCTTACAACTCCACCATGCACTGAAGGTGTTGTTTGGACAATAGTGAAGGAGGTGAGGACAGTCTCAACCGAGCAATTGAATGCCTTGAAAGGAGCTGTCCATCATGGAGAGGAAAATGCAAGGCCAACACAAGAACTTGGTGGAAGACAAGTTTTGTTATATAAAGATGTGAATTGGGAATTGTGA
Predicted protein sequences of Glyma03g28950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g28950.2 sequence type=predicted peptide gene model=Glyma03g28950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MALPTNLKFFCVFLLVLILYSSSFLASAVDPKAEDEEFTFAEGSIKGPKNWGQINPKWKVCGDGKLQSPIDLSDQMAQELPQLGKLDKVYKPAPVVLINRGHDIMLQWNGDAGQLNINGTFYNLMQCHWHTPSEHTLNGTKFDLELHAVHKTSKGEIAVIGIWYKIGHSDPLLSKLLNDIKSIKDKKIDVGVINPGDIMFETKEYYRYVGSLTTPPCTEGVVWTIVKEVRTVSTEQLNALKGAVHHGEENARPTQELGGRQVLLYKDVNWEL*