Glyma03g28910 - SoyBase

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Report for Sequence Feature Glyma03g28910

Feature Type:	gene_model
Chromosome:	Gm03
Start:	36874897
stop:	36878051
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g28910

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41510	AT	Annotation by Michelle Graham. TAIR10: cytokinin oxidase/dehydrogenase 1 \| chr2:17314626-17316861 FORWARD LENGTH=575	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0009690	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process	SoyBase	N/A	ISS
GO:0009823	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin catabolic process	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0048507	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem development	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008762	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-N-acetylmuramate dehydrogenase activity	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016614	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on CH-OH group of donors	SoyBase	N/A	ISS
GO:0019139	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cytokinin dehydrogenase activity	SoyBase	N/A	ISS
GO:0050660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding	SoyBase	N/A	ISS
KOG1231	KOG	Proteins containing the FAD binding domain	JGI		ISS
PTHR13878	Panther	GULONOLACTONE OXIDASE	JGI		ISS
PTHR13878:SF18	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01565	PFAM	FAD binding domain	JGI		ISS
PF09265	PFAM	Cytokinin dehydrogenase 1, FAD and cytokinin binding	JGI		ISS
UniRef100_H9D2G5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Cytokinin dehydrogenase 1 n=1 Tax=Glycine max RepID=H9D2G5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_H9D2G5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cytokinin dehydrogenase 1 n=1 Tax=Glycine max RepID=H9D2G5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g28910

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28910

Paralog	Evidence	Comments
Glyma19g31620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28910 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g133300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g28910

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g28910

Limit To All Plant Sequences

>Glyma03g28910.2   sequence type=CDS   gene model=Glyma03g28910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTCATCAAAACCTAGTGGCTTCTATGAACAAAGGAGCTTTCCATCAATCAAAATCCTCATACTTATACTCCTTAATTCTATACTTCACAAAGCCAACTCAGGCTGCAGCAACTCTGTTTCCAACTCCTTAGTTCCATTTCTATCTCATGAGATACTCTCATCATTGCAAACACTACCTCTAGATGGCCACTTTAGCCTAAGGGACAATGAGGATGCTGCCAAGGACTTTGGCAACATACACCATTTTCCTCCCCTAGCAGTGCTGTATCCAAAAACAGTTTCTGACATATCACTCACCATCAAGCATGTTTTTGAAATGGGGTTTGCCGCACAGCTGAAGATTGCTGCTAGAGGCCATGGCCATTCACTTCAAGGCCAAGCACAAGTACATGGAGGCCTAGTCATTAACATGGAGTCTTTACAGGGTCCTGAAATGAAAGTTCACAATGGAGAATTGCCTTATGTGGATGTCTCAGGAGGTGAGTTGTGGATAAACATTCTGCATGAGACTCTTAAACTTGGGTTGGCACCAAAGTCATGGACAGATTACCTTCACCTCACTGTTGGGGGTACTCTTTCAAATGCTGGCATAAGTGGGCAAGCCTTCAAACATGGACCTCAGATCAATAACATCTTTCAGCTTGAAGTGATCACAGGAAAAGGAGAGGTGGTTACCTGCTCAGGGAACCGAAACGCTGACCTTTTTTATGGTGTTCTTGGAGGGCTTGGTCAATTTGGCATCATTACAAGGGCTAGAATTTCTCTTGAACCAGCACCTAAGATGGTTAAATGGATTAGGGTGCTCTACTCAGAGTTCTCTACATTTACTAGGGATCAAGAGTATTTGGTATCACTTAACAACACATTTGATTATATTGAAGGGTTTGTGATCATAAACAGAACTGGCATCCTTAACAATTGGAGATCATCCTTTGATCCCAAAAACCAACTTCAAGCCAGCCAATTCAGTTCTGATGGGAAAACCTTCTACTGTCTAGAGATGGCAAAATATTTCAACCCTGGTGAAGCTGAAGCCATGAATCAGAGTGTAGCTTACCTACTGTCAAAGTTGAGTTACATTCCATCCACACTCTTCCTATCAGAAGTTTCTTACGTGGAATTCTTAGACAGAGTGCATGTTTCTGAGAAAAAGCTAAGAGCACAAGGCTTGTGGGAAGTTCCCCATCCTTGGCTGAACCTTCTGATCCCAAGGAGTGAGATTCATAACTTTGCTGAAGAAGTATTTGGCAATATTCTTAAAGACACAAACAATGGACCCATACTCATTTACCCCGTCAACCAAACACGGTGGAACAGCAAAACATCATTGATTACCCCAGAGGAAGATATTTTTTACCTAGTAGCATTCCTATCCTTAGCTCTCCCAAATTCTACCGGTGCAGACAGTTTAGAACACATTCTAGCCCAAAACAAAAGAGTCATAGATTTCTACACTGGTGCCAAAATGAGAGTGAAGCAATACCTTCCCCATTACAGCACACAGGAAGAATGGCAAGTCCATTTTGGGTCACGATGGGAGACATTCGTGGAAAGAAAAAGGGCCTATGACCCACTAGCACTGCTAGCCCCTGGCCACAAAATCTTTCAAAAGGCTGTCTCCTCTTCGTGTTAG

Predicted protein sequences of Glyma03g28910

Limit To All Plant Sequences

>Glyma03g28910.2   sequence type=predicted peptide   gene model=Glyma03g28910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSSKPSGFYEQRSFPSIKILILILLNSILHKANSGCSNSVSNSLVPFLSHEILSSLQTLPLDGHFSLRDNEDAAKDFGNIHHFPPLAVLYPKTVSDISLTIKHVFEMGFAAQLKIAARGHGHSLQGQAQVHGGLVINMESLQGPEMKVHNGELPYVDVSGGELWINILHETLKLGLAPKSWTDYLHLTVGGTLSNAGISGQAFKHGPQINNIFQLEVITGKGEVVTCSGNRNADLFYGVLGGLGQFGIITRARISLEPAPKMVKWIRVLYSEFSTFTRDQEYLVSLNNTFDYIEGFVIINRTGILNNWRSSFDPKNQLQASQFSSDGKTFYCLEMAKYFNPGEAEAMNQSVAYLLSKLSYIPSTLFLSEVSYVEFLDRVHVSEKKLRAQGLWEVPHPWLNLLIPRSEIHNFAEEVFGNILKDTNNGPILIYPVNQTRWNSKTSLITPEEDIFYLVAFLSLALPNSTGADSLEHILAQNKRVIDFYTGAKMRVKQYLPHYSTQEEWQVHFGSRWETFVERKRAYDPLALLAPGHKIFQKAVSSSC*

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