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Report for Sequence Feature Glyma03g28880

Feature Type:gene_model
Chromosome:Gm03
Start:36814389
stop:36825814
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g28880
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10140AT Annotation by Michelle Graham. TAIR10: RECA homolog 3 | chr3:3134984-3137069 FORWARD LENGTH=389 SoyBaseE_val: 2.00E-42ISS
GO:0000002GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrial genome maintenance SoyBaseN/AISS
GO:0006259GO-bp Annotation by Michelle Graham. GO Biological Process: DNA metabolic process SoyBaseN/AISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0006310GO-bp Annotation by Michelle Graham. GO Biological Process: DNA recombination SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009432GO-bp Annotation by Michelle Graham. GO Biological Process: SOS response SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003697GO-mf Annotation by Michelle Graham. GO Molecular Function: single-stranded DNA binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0008094GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-dependent ATPase activity SoyBaseN/AISS
GO:0017111GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity SoyBaseN/AISS
PTHR22942Panther RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER JGI ISS
PTHR22942:SF1Panther DNA REPAIR PROTEIN RECA JGI ISS
PF00154PFAM recA bacterial DNA recombination protein JGI ISS
UniRef100_G7KSL4UniRef Annotation by Michelle Graham. Most informative UniRef hit: RecA n=1 Tax=Medicago truncatula RepID=G7KSL4_MEDTR SoyBaseE_val: 5.00E-60ISS
UniRef100_I1JN96UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JN96_SOYBN SoyBaseE_val: 2.00E-151ISS

Expression Patterns of Glyma03g28880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28880
ParalogEvidenceComments
Glyma19g31600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28880 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma03g28880
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g28880
>Glyma03g28880.1   sequence type=CDS   gene model=Glyma03g28880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGGAGGTAGACAAGTAATGACCAGGATTGGCATGAATGCCTGCTCTCTTTCTTCTGCAGCTGAAGCTTCAGATTTTGAATGTGATGTGACCCATGATGATGTCAAAGCAGCAGACAAAGATAATGCACTTTGCTTGGCTCTCTCACAGCTTAAGATTTTTGGTGTACGCCGTGCTCGTGTGATATCTATAGGCTCCTTGAAGCTTCATCTAGCTCTGGGAATTAGAGGATTACCAAAGGGTAGGATTGTGGAAATTTATGGACGAGATGCAGCTGGTAAGACTACAATTGCACTTCGAATTATTAAAGAAGCTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTGGAAAATGCATTGGACTTCTCACTTATGGAATCGATGGGCGTGGAGGGTGTTATGATCTGTGCTCAAGTGGTAAAAAATAAACTAGCACCCGCAGCAACGAAAAGGGCTGAACAGGGTATCAAGTTTGGAAGAGGGTTTTGCCATGAGTCAGATGTCTTAGATTTGGCTTGTGAACATGGAATCATTGTGAAACATGAGGGAAGCTACTTTATTGAAGGGAGCAGTTTGGATAGTAGAGAAGCAGCTGAACTATTTTTGGCTCAAAATGATGCAGTTTGTGACAAGTTG
Predicted protein sequences of Glyma03g28880
>Glyma03g28880.1   sequence type=predicted peptide   gene model=Glyma03g28880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
NGGRQVMTRIGMNACSLSSAAEASDFECDVTHDDVKAADKDNALCLALSQLKIFGVRRARVISIGSLKLHLALGIRGLPKGRIVEIYGRDAAGKTTIALRIIKEAQKLGGYCAYLDVENALDFSLMESMGVEGVMICAQVVKNKLAPAATKRAEQGIKFGRGFCHESDVLDLACEHGIIVKHEGSYFIEGSSLDSREAAELFLAQNDAVCDKL






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