Report for Sequence Feature Glyma03g28770
Feature Type: gene_model
Chromosome: Gm03
Start: 36710779
stop: 36715693
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma03g28770
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G57180 AT
Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:21163663-21166006 REVERSE LENGTH=660
SoyBase E_val: 0 ISS
GO:0009742 GO-bp
Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway
SoyBase N/A ISS
GO:0016556 GO-bp
Annotation by Michelle Graham. GO Biological Process: mRNA modification
SoyBase N/A ISS
GO:0032502 GO-bp
Annotation by Michelle Graham. GO Biological Process: developmental process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0005525 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GTP binding
SoyBase N/A ISS
KOG1249
KOG
Predicted GTPases
JGI ISS
PTHR11089 Panther
GTP-BINDING PROTEIN-RELATED
JGI ISS
PTHR11089:SF3 Panther
GTP-BINDING PROTEIN-RELATED
JGI ISS
UniRef100_Q8W4I6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GTP binding protein n=1 Tax=Arabidopsis thaliana RepID=Q8W4I6_ARATH
SoyBase E_val: 0 ISS
UniRef100_UPI00023379AC UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023379AC related cluster n=1 Tax=unknown RepID=UPI00023379AC
SoyBase E_val: 0 ISS
Expression Patterns of Glyma03g28770
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma03g28770
Paralog Evidence Comments
Glyma19g31511 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma03g28770 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.03g132000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma03g28770
Coding sequences of Glyma03g28770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma03g28770.1 sequence type=CDS gene model=Glyma03g28770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTTTGCTTTGCCTTACCCTCTTCAGCATTCGCGCTTGGGCACCTGAATAAGTCTATCTCTCAGACTCAAGACTTGACAGCCATGACTATGTTGTTGTCCACAATCATTGTTCCTTCCACCAAGCTCATCATCTTCAACAACAACAACACGCAAGAGCGTGCACTTCCAACTTTTCGTCATTTCTCAGATTCCAGCAAACGCTTCGAGAAAGTGTCGTCCTTTATTGCTTTTGCGGTGAACGGTGGCTCCGCTCATGTTAAAGCTACGCATAGGAGAGATGGTAGTAGAAACCCGCTTATGAGTGAGGGGAGAGATGAAGATGAAGCTAGAGGACCCATTTGCCCTGGTTGTGGAGTCTTCATGCAAGATAAGGACCCTAATTTTCTCGGGTATTACCAACCAAGGAAGATGAAAATGGAAGAGTTTTCAGAAGAGGAGGATGATGATGTGGGGTTTTTGAATGGAAGTGAAAGTGAGCTTGGAGAAGAAAGTGAAGGGTTAATAGATGAGTTAGATTGGGATTCTGATGATTTGGAAGATGAGTTATTGGGTGAAGATGATAATGAGAAGTTGGAATTGGATGGGTTTACACCTGCTGGAGTTGGGTATGGTAACATAACTGAGGAGTATTTGGAGAGGGTGAAGAAGAAGAAGGTTTCCAAAGCTGAGAAGAAGAGGATGGCTAAGGAGGCTGACAAGGAGAAAGAGGAGGCCACCGTGTGTGCCCGGTGCCATTCCTTGAGAAACTATGGCCAGGTGAAGAACCAGACGGTGGAGAATCTCATACCTGATTTTGATTTCGATAGGTTGATTTCGACGCGGCTGATGAACCCTTCTGGGAGTGGCAGTGCTACTGTTGTTGTCATGGTTGTGGACTGTGTTGATTTCGATGGTTCATTCCCTAGAACTGCGGTGAAGTCGTTGTTCCAGGCGTTGGAAAGAATTCAGGATAACTCGAAGAGGTCCAAGAAGCTGCCAAAACTTGTTCTTGTGGCCACAAAGGTTGATCTCCTTCCGTCGCAGGTTTCTCCTGCAAGGTTGGATAGATGGGTTAGAAACCGTGCAAGATCCGGAGGAGCGCCTAAGTTAAACGGGGTTTATATGGTCAGTTCGAAGAAGGATTTAGGTGTGAGGAATTTGTTGTCATTTGTGAAGGATTTGGCTGGTCCTCGTGGGAATGTGTGGGTGATTGGAGCTCAAAATGCAGGGAAGTCTACTCTGATCAATGCGTTTGCAAAGAAACAAGGAGCTAAAGTTACGAAGCTCACGGAAGCTCCAATTCCTGGCACAACGCTTGGGATCTTGAGAATTGCAGGAGTTTTGCCAGCTAAGACTAAGATGTTTGACACTCCAGGGCTCTTGCACCCATATTTAATGTCAATGAGATTGAACCGGGATGAGCAAAAGATGGTTGAGATACGGAAGGAACTTCGGCCTCGGACATACAGAATTAAGGTAGGGCAGGCTATACACATTGGTGGCTTGACAAGACTTGACCTTGTTGAAGCCTCTGTTGAAACAATATATGCCACAGTTTGGGCATCACTAAATGTTTCTCTTCACATGGGGAAAATAGAAAATGCTGACGAGGTTTGGAGAAATCATGTTGGTATCAGACTGCAGCCTCCCACTGGTAACGACCGTGCCGCCGAACTAGGAACATGGCAGGAAAGGGAAGTCAAAGTGTCTGGAACCAGTTGGGATGTCAACACCATTGACATAGCAATAGCGGGTTTAGGTTGGTTCTCATTGTGTCTCAAAGGTGAAGCAACCACAAAACTGTGGGTCTTCCATGGAGTAGAAGTAACCTTGAGAGAACCTTTGGTGCTTGACCGGGCGCCATCACTTGAGAAGCCAGGATTTTGGCTACCAAAAGCAATATCTGATGCTATTGGCAACCAAACCAAACTTGAAGCTCAAAGAAGGAAACAACAACTTGAAGATGAAGGTACGGAATACGTGGGGGCAGGGGCAGAGTTATCTGCATGA
Predicted protein sequences of Glyma03g28770
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma03g28770.1 sequence type=predicted peptide gene model=Glyma03g28770 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLCFALPSSAFALGHLNKSISQTQDLTAMTMLLSTIIVPSTKLIIFNNNNTQERALPTFRHFSDSSKRFEKVSSFIAFAVNGGSAHVKATHRRDGSRNPLMSEGRDEDEARGPICPGCGVFMQDKDPNFLGYYQPRKMKMEEFSEEEDDDVGFLNGSESELGEESEGLIDELDWDSDDLEDELLGEDDNEKLELDGFTPAGVGYGNITEEYLERVKKKKVSKAEKKRMAKEADKEKEEATVCARCHSLRNYGQVKNQTVENLIPDFDFDRLISTRLMNPSGSGSATVVVMVVDCVDFDGSFPRTAVKSLFQALERIQDNSKRSKKLPKLVLVATKVDLLPSQVSPARLDRWVRNRARSGGAPKLNGVYMVSSKKDLGVRNLLSFVKDLAGPRGNVWVIGAQNAGKSTLINAFAKKQGAKVTKLTEAPIPGTTLGILRIAGVLPAKTKMFDTPGLLHPYLMSMRLNRDEQKMVEIRKELRPRTYRIKVGQAIHIGGLTRLDLVEASVETIYATVWASLNVSLHMGKIENADEVWRNHVGIRLQPPTGNDRAAELGTWQEREVKVSGTSWDVNTIDIAIAGLGWFSLCLKGEATTKLWVFHGVEVTLREPLVLDRAPSLEKPGFWLPKAISDAIGNQTKLEAQRRKQQLEDEGTEYVGAGAELSA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
