Glyma03g28750 - SoyBase

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Report for Sequence Feature Glyma03g28750

Feature Type:	gene_model
Chromosome:	Gm03
Start:	36692265
stop:	36700040
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g28750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57170	AT	Annotation by Michelle Graham. TAIR10: N-acetylglucosaminyl transferase component family protein / Gpi1 family protein \| chr3:21159620-21162259 REVERSE LENGTH=560	SoyBase	E_val: 3.00E-166	ISS
GO:0006506	GO-bp	Annotation by Michelle Graham. GO Biological Process: GPI anchor biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0016740	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity	SoyBase	N/A	ISS
GO:0017176	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol N-acetylglucosaminyltransferase activity	SoyBase	N/A	ISS
KOG1183	KOG	N-acetylglucosaminyltransferase complex, subunit PIG-Q/GPI1, required for phosphatidylinositol biosynthesis	JGI		ISS
PTHR21329	Panther	N-ACETYLGLUCOSAMINYL TRANSFERASE COMPONENT GPI1-RELATED	JGI		ISS
PTHR21329:SF3	Panther	PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERA	JGI		ISS
PF05024	PFAM	N-acetylglucosaminyl transferase component (Gpi1)	JGI		ISS
UniRef100_I1N375	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N375_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HRH2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: N-acetylglucosaminyl transferase component n=1 Tax=Medicago truncatula RepID=Q2HRH2_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g28750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28750

Paralog	Evidence	Comments
Glyma19g31491	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g131800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g28750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g28750

Limit To All Plant Sequences

>Glyma03g28750.3   sequence type=transcript   gene model=Glyma03g28750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTGCAATTTTGCCTTTTATATTTTCTTGTCTTGGGCGGTTTCGTTCTGTTTCACACCCTCACACACAGGCACAGCCTCGCAGTTTTCGCTCCAACCAAATTCTCACTTCCGCTACTCCGCCGCCGTTTCGCCGCCTCTACGGCGGTGCATCATCGAAACTCAGGGACTTCATGAATAGTAGCTTAGTTTATGTGAAGATCATAAGAGGAAGATGAGAAGACATTGTAGGCTTTGGTGGCCAAAGCAACTTTTATCAAATGAAGAATCATCATCCAGTATTTTGTTGGGGTGGTTTGTCACCTGCTCACCATCATCCCTTGACATTATTGTAGCCTTTACTTGCAGTGAAGTCTTGCTTTCTAGTTATAGTCCTGGCATTGAGGGAATCATTGATGGCACATGTGGGAGCATGCCTTCAGTTCTTGAGGATAAGTCCAAGTTCTCTGTGCTTGGTCTGTGTGTCACTGGCCCTACTACTAGTAATGGTTTGATGAATGGGGCGGAAGATGACAAAAAGAAGTTCTCTGAGCATGGCAATGCTTTGCAAGAGGGAGGTACAGATGGAAAGAATAACTCTATGAGTTGTCGATGCTTCCAGTTAGATGGTTCATTGAGGAAAAGTAGCCAATATGTTCTTGGAAGAAGTAATTGGGTTCTGCTCATGTTTGATTCTCCTGAACAGAATGATGTAGTAATACACAGGCTTCCAAAATTGCATCACATTCATTGGAATGGACTAACTGTGTCACAATATGATGTTCACGTATGTTATAATTTATGAAACACCCTCTTATGGTGCTCATCATTTCTCATTATGTCATTCGGGTTCAAATGAGCAAGCTAAAACTTCCATTAAAAATCCTAAATGGGTCGATGAGCTTCATAAAAAGCAGCAATTCATTGAATTGGATACAATTATTCTGGCAATTAATTGCACTGCTGCTGCTAAAAGAATTTTTGAGACACACCTGGTCCCAAGAAGATCATTGAGCCAGCTCTCCATATTTCCCATGCTTTATGTTGTCATAGGGCACCTGTTTTCCAAATTTTGGGCTTCGATCTCCACCATGCTCTATATTGTTCTTCAGTTTTTCCAAACACATTTTAGTTACGAATCAGAATCATGGGCATATGTGAAATCAACAAATGTATTCATGAAGACTGCTTGGATTAATATGCGAATCCGTTGTGGTCAGATATTATATTGGCCAATCTTTCTTCGGGAAAATGACCCCAGGTCACAATCATGTGTTGAATATGTAGAGAAAGCTGCAATGCATAGGCATTCTATGTGGTCTACTTTGGTTGTTGATATTCTCCTGGGAAACTTGGTTGGCTGGGCATTACTATATCGCGCAGAATCAGTTTGCCTTTCAGTTTTGAACTTTATGCATGGGTTTTCCACATTTTTGCGCTCTGGGTGTGTGTGGTTAATGGGAAACCCTGCAGGCTTCAAATTGAATGCTGAGTTGGCAGGAGTACTTGGCATGGCTTCTTTGAATGCAGTCCAGATATGGTCAACACTCTGGATCTTTGTGGGTTACATCTTCAATTATATTATTCAAGGGCTTTCTGTCTTAGGAATCCTTTGTGGATTCACTGTTCCTGCTGCTTTGGTCATAGACATGATTGCACTGGCAACTTTACACATTTCAACTCTTCATTGGTTCATTTCACTTGTATATTCATCACAATTACAGGCATTAGCAGCCTTGTGGCGGCTTTTCAGGGGTCGGAAATGGAATCCTCTGAGGCAGCGGTTGGATAGCTTTGACTATACTGTGAAGCAACACATTGTTGGATCTCTTTTATTTACACCACTTCTACTTCTTTTACCAACTACTTCCGTTTTCTATATATTCTTTAGTATCATGGACACAACCATTAACCTTGTCTGTCTACTGATTGAAGTCACTATTTCAGTAATTCATGTTACCCCTTATACCAAGATATTTCTTTGGTTGGTAAGACAAGGAAGATTCCCTTCTGGAATATGGCTTGAAATTATTGGTTGTCAGAGTAATAGTACTGCCTCTCCAAGTGCTGATATTACTGATGAAATGACCTCATACAAGGAGTCATTGCATCTAAAGGATTTCAATAGAGAAAAATCTAGTAGTCTAGTTTCAGCTCTCCACAGCAACTACTTGAGCATAGGAAAAATTATCTCACCTCACTACATACATGTTTTTTTGGGAGTTTCTGGGTCATCCATCTCCACAGTGGCTCATGGAATACTCATTGGACAAAGAATGCCATCTATGCGTGGCACCCTTCTACCTTCACCAATGCCATGGACGTCCATGCACTACAAAGAGTATTGGCGCCTTTGTCATGATTCACTTATTGCATGCTTCAGATGACAATGGGCTTTGGCTCAGGTTTTATTATTCTTATCGTCAACTCGGGATTTAATTACAAACACAGATTCATCCAACTTGCTCTACTCTCGTGTTAGTGGTTTTTTTCTCTCTTCGATGGGTAGAATGCTTTATAAAATTATTCTTCCATAGTTTAGTAAGTTCCTACTCTTGAGTATGGTATAGTCGGCATTTTTTTTTTTTTTGCTTTTCCCATGCTGAGAATGGTGTGTGCTATAGAAAAATAACATTTTTATTTTATTTTACTGATTTTGTAAATATATTGTATAACTCTTATGCTTGGGCGCATATACAAGGTTATCAAACTCGAGAGTTTATATAAACTCGTGAGAGTTTCATACACTCGACTCGTAAGAGTCTAC

Coding sequences of Glyma03g28750

Limit To All Plant Sequences

>Glyma03g28750.2   sequence type=CDS   gene model=Glyma03g28750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAGACATTGTAGGCTTTGGTGGCCAAAGCAACTTTTATCAAATGAAGAATCATCATCCAGTATTTTGTTGGGGTGGTTTGTCACCTGCTCACCATCATCCCTTGACATTATTGTAGCCTTTACTTGCAGTGAAGTCTTGCTTTCTAGTTATAGTCCTGGCATTGAGGGAATCATTGATGGCACATGTGGGAGCATGCCTTCAGTTCTTGAGGATAAGTCCAAGTTCTCTGTGCTTGGTCTGTGTGTCACTGGCCCTACTACTAGTAATGGTTTGATGAATGGGGCGGAAGATGACAAAAAGAAGTTCTCTGAGCATGGCAATGCTTTGCAAGAGGGAGGTACAGATGGAAAGAATAACTCTATGAGTTGTCGATGCTTCCAGTTAGATGGTTCATTGAGGAAAAGTAGCCAATATGTTCTTGGAAGAAGTAATTGGGTTCTGCTCATGTTTGATTCTCCTGAACAGAATGATGTAGTAATACACAGGCTTCCAAAATTGCATCACATTCATTGGAATGGACTAACTGTGTCACAATATGATGTTCACGTTATAATTTATGAAACACCCTCTTATGGTGCTCATCATTTCTCATTATGTCATTCGGGTTCAAATGAGCAAGCTAAAACTTCCATTAAAAATCCTAAATGGGTCGATGAGCTTCATAAAAAGCAGCAATTCATTGAATTGGATACAATTATTCTGGCAATTAATTGCACTGCTGCTGCTAAAAGAATTTTTGAGACACACCTGGTCCCAAGAAGATCATTGAGCCAGCTCTCCATATTTCCCATGCTTTATGTTGTCATAGGGCACCTGTTTTCCAAATTTTGGGCTTCGATCTCCACCATGCTCTATATTGTTCTTCAGTTTTTCCAAACACATTTTAGTTACGAATCAGAATCATGGGCATATGTGAAATCAACAAATGTATTCATGAAGACTGCTTGGATTAATATGCGAATCCGTTGTGGTCAGATATTATATTGGCCAATCTTTCTTCGGGAAAATGACCCCAGGTCACAATCATGTGTTGAATATGTAGAGAAAGCTGCAATGCATAGGCATTCTATGTGGTCTACTTTGGTTGTTGATATTCTCCTGGGAAACTTGGTTGGCTGGGCATTACTATATCGCGCAGAATCAGTTTGCCTTTCAGTTTTGAACTTTATGCATGGGTTTTCCACATTTTTGCGCTCTGGGTGTGTGTGGTTAATGGGAAACCCTGCAGGCTTCAAATTGAATGCTGAGTTGGCAGGAGTACTTGGCATGGCTTCTTTGAATGCAGTCCAGATATGGTCAACACTCTGGATCTTTGTGGGTTACATCTTCAATTATATTATTCAAGGGCTTTCTGTCTTAGGAATCCTTTGTGGATTCACTGTTCCTGCTGCTTTGGTCATAGACATGATTGCACTGGCAACTTTACACATTTCAACTCTTCATTGGTTCATTTCACTTGTATATTCATCACAATTACAGGCATTAGCAGCCTTGTGGCGGCTTTTCAGGGGTCGGAAATGGAATCCTCTGAGGCAGCGGTTGGATAGCTTTGACTATACTGTGAAGCAACACATTGTTGGATCTCTTTTATTTACACCACTTCTACTTCTTTTACCAACTACTTCCGTTTTCTATATATTCTTTAGTATCATGGACACAACCATTAACCTTGTCTGTCTACTGATTGAAGTCACTATTTCAGTAATTCATGTTACCCCTTATACCAAGATATTTCTTTGGTTGGTAAGACAAGGAAGATTCCCTTCTGGAATATGGCTTGAAATTATTGGTTGTCAGAGTAATAGTACTGCCTCTCCAAGTGCTGATATTACTGATGAAATGACCTCATACAAGGAGTCATTGCATCTAAAGGATTTCAATAGAGAAAAATCTAGTAGTCTAGTTTCAGCTCTCCACAGCAACTACTTGAGCATAGGAAAAATTATCTCACCTCACTACATACATGTTTTTTTGGGAGTTTCTGGGTCATCCATCTCCACAGTGGCTCATGGAATACTCATTGGACAAAGAATGCCATCTATGCGTGGCACCCTTCTACCTTCACCAATGCCATGGACGTCCATGCACTACAAAGAGTATTGGCGCCTTTGTCATGATTCACTTATTGCATGCTTCAGATGA

>Glyma03g28750.3   sequence type=CDS   gene model=Glyma03g28750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTTCACGTATGTTATAATTTATGAAACACCCTCTTATGGTGCTCATCATTTCTCATTATGTCATTCGGGTTCAAATGAGCAAGCTAAAACTTCCATTAAAAATCCTAAATGGGTCGATGAGCTTCATAAAAAGCAGCAATTCATTGAATTGGATACAATTATTCTGGCAATTAATTGCACTGCTGCTGCTAAAAGAATTTTTGAGACACACCTGGTCCCAAGAAGATCATTGAGCCAGCTCTCCATATTTCCCATGCTTTATGTTGTCATAGGGCACCTGTTTTCCAAATTTTGGGCTTCGATCTCCACCATGCTCTATATTGTTCTTCAGTTTTTCCAAACACATTTTAGTTACGAATCAGAATCATGGGCATATGTGAAATCAACAAATGTATTCATGAAGACTGCTTGGATTAATATGCGAATCCGTTGTGGTCAGATATTATATTGGCCAATCTTTCTTCGGGAAAATGACCCCAGGTCACAATCATGTGTTGAATATGTAGAGAAAGCTGCAATGCATAGGCATTCTATGTGGTCTACTTTGGTTGTTGATATTCTCCTGGGAAACTTGGTTGGCTGGGCATTACTATATCGCGCAGAATCAGTTTGCCTTTCAGTTTTGAACTTTATGCATGGGTTTTCCACATTTTTGCGCTCTGGGTGTGTGTGGTTAATGGGAAACCCTGCAGGCTTCAAATTGAATGCTGAGTTGGCAGGAGTACTTGGCATGGCTTCTTTGAATGCAGTCCAGATATGGTCAACACTCTGGATCTTTGTGGGTTACATCTTCAATTATATTATTCAAGGGCTTTCTGTCTTAGGAATCCTTTGTGGATTCACTGTTCCTGCTGCTTTGGTCATAGACATGATTGCACTGGCAACTTTACACATTTCAACTCTTCATTGGTTCATTTCACTTGTATATTCATCACAATTACAGGCATTAGCAGCCTTGTGGCGGCTTTTCAGGGGTCGGAAATGGAATCCTCTGAGGCAGCGGTTGGATAGCTTTGACTATACTGTGAAGCAACACATTGTTGGATCTCTTTTATTTACACCACTTCTACTTCTTTTACCAACTACTTCCGTTTTCTATATATTCTTTAGTATCATGGACACAACCATTAACCTTGTCTGTCTACTGATTGAAGTCACTATTTCAGTAATTCATGTTACCCCTTATACCAAGATATTTCTTTGGTTGGTAAGACAAGGAAGATTCCCTTCTGGAATATGGCTTGAAATTATTGGTTGTCAGAGTAATAGTACTGCCTCTCCAAGTGCTGATATTACTGATGAAATGACCTCATACAAGGAGTCATTGCATCTAAAGGATTTCAATAGAGAAAAATCTAGTAGTCTAGTTTCAGCTCTCCACAGCAACTACTTGAGCATAGGAAAAATTATCTCACCTCACTACATACATGTTTTTTTGGGAGTTTCTGGGTCATCCATCTCCACAGTGGCTCATGGAATACTCATTGGACAAAGAATGCCATCTATGCGTGGCACCCTTCTACCTTCACCAATGCCATGGACGTCCATGCACTACAAAGAGTATTGGCGCCTTTGTCATGATTCACTTATTGCATGCTTCAGATGA

Predicted protein sequences of Glyma03g28750

Limit To All Plant Sequences

>Glyma03g28750.2   sequence type=predicted peptide   gene model=Glyma03g28750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRHCRLWWPKQLLSNEESSSSILLGWFVTCSPSSLDIIVAFTCSEVLLSSYSPGIEGIIDGTCGSMPSVLEDKSKFSVLGLCVTGPTTSNGLMNGAEDDKKKFSEHGNALQEGGTDGKNNSMSCRCFQLDGSLRKSSQYVLGRSNWVLLMFDSPEQNDVVIHRLPKLHHIHWNGLTVSQYDVHVIIYETPSYGAHHFSLCHSGSNEQAKTSIKNPKWVDELHKKQQFIELDTIILAINCTAAAKRIFETHLVPRRSLSQLSIFPMLYVVIGHLFSKFWASISTMLYIVLQFFQTHFSYESESWAYVKSTNVFMKTAWINMRIRCGQILYWPIFLRENDPRSQSCVEYVEKAAMHRHSMWSTLVVDILLGNLVGWALLYRAESVCLSVLNFMHGFSTFLRSGCVWLMGNPAGFKLNAELAGVLGMASLNAVQIWSTLWIFVGYIFNYIIQGLSVLGILCGFTVPAALVIDMIALATLHISTLHWFISLVYSSQLQALAALWRLFRGRKWNPLRQRLDSFDYTVKQHIVGSLLFTPLLLLLPTTSVFYIFFSIMDTTINLVCLLIEVTISVIHVTPYTKIFLWLVRQGRFPSGIWLEIIGCQSNSTASPSADITDEMTSYKESLHLKDFNREKSSSLVSALHSNYLSIGKIISPHYIHVFLGVSGSSISTVAHGILIGQRMPSMRGTLLPSPMPWTSMHYKEYWRLCHDSLIACFR*

>Glyma03g28750.3   sequence type=predicted peptide   gene model=Glyma03g28750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMFTYVIIYETPSYGAHHFSLCHSGSNEQAKTSIKNPKWVDELHKKQQFIELDTIILAINCTAAAKRIFETHLVPRRSLSQLSIFPMLYVVIGHLFSKFWASISTMLYIVLQFFQTHFSYESESWAYVKSTNVFMKTAWINMRIRCGQILYWPIFLRENDPRSQSCVEYVEKAAMHRHSMWSTLVVDILLGNLVGWALLYRAESVCLSVLNFMHGFSTFLRSGCVWLMGNPAGFKLNAELAGVLGMASLNAVQIWSTLWIFVGYIFNYIIQGLSVLGILCGFTVPAALVIDMIALATLHISTLHWFISLVYSSQLQALAALWRLFRGRKWNPLRQRLDSFDYTVKQHIVGSLLFTPLLLLLPTTSVFYIFFSIMDTTINLVCLLIEVTISVIHVTPYTKIFLWLVRQGRFPSGIWLEIIGCQSNSTASPSADITDEMTSYKESLHLKDFNREKSSSLVSALHSNYLSIGKIISPHYIHVFLGVSGSSISTVAHGILIGQRMPSMRGTLLPSPMPWTSMHYKEYWRLCHDSLIACFR*

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