Glyma03g28700 - SoyBase

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Report for Sequence Feature Glyma03g28700

Feature Type:	gene_model
Chromosome:	Gm03
Start:	36655718
stop:	36658824
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g28700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G52800	AT	Annotation by Michelle Graham. TAIR10: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein \| chr1:19664044-19665362 FORWARD LENGTH=314	SoyBase	E_val: 8.00E-94	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_I1JN85	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JN85_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HRI0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin 20 oxidase n=1 Tax=Medicago truncatula RepID=Q2HRI0_MEDTR	SoyBase	E_val: 7.00E-167	ISS

Expression Patterns of Glyma03g28700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28700

Paralog	Evidence	Comments
Glyma19g31440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g131200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g28700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g28700

Limit To All Plant Sequences

>Glyma03g28700.1   sequence type=CDS   gene model=Glyma03g28700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATCCCAAACACAGTCTCAAGAACTTCATGTGGTGGACTTCACCGACGAAAACACGAAGAAGCCCGGCACCGATGCATGGCTCTCAGCGTGCAGTGTAGTGAGGACTGCACTCGAGGACAACGGTTTTTTCATGGCACGCTATGATAAAGTTGGCAAAGAGCTTTGTGACTCAGTTGTATCTGCGGTGGAAGAGCTATTTGATCTCCCTGTGGAGACAAAAGCGCAAAAGACTAGTGAGAAACTTTTCCATGGCTACTTAGGGCAAGTCTCGTGGCTTCCTTTGTATGAATCTGTGGGCATTGATGATCCGTTGACCTTGCTAGGGTGTCAAAAATTTGGCCACATAATGTGGCCGGAGGGGAATCATCGTTTCTGTGAAAGCATCAATGAGTATTCTAAGTTGTTGGGAGAGTTGGACCATATGGCGAAGAGAATGGTGTTTGAGAGCTATGGTGTGGACATGCAACGATGCGATTCTTTCATAGAATCAAACGATTATCTACTTCGATGCATGATGTATAGGACACCCCAGACGGGTGAAATTGATTTGGGACTGCAACCTCACTCGGACTTGACCATCACTTCCATTGTACATCAGCTGAATAATCTGAATGGCTTGGAAATCAAACTGAAGGATGGGGAATGGAAAGGGATTGATGCTTCACCCTCTTCGTTTGTAGTTATGGCAGGTGACGCATTCAATGTGTGGAGTAATGGCAGAATACGGCCATGTGAACACAGAGTTACAATGAATGCAAAGAAAACCAGATACTCTATGGGACTGTTTTCTTTTGGTGGTAATAAGGTGATGCGTATACCTGAGGAGCTAGTTAATAAGCAACATCCCTTGCGTTATAAACCACTATTCGACCATTATGAATACCTTCGTTTCTATGACAAAGAGAAAATCAAAGAGCCTTACTCTCGAATCCAAGCCCATTGTGGAATCTCTACCCTACAGTAG

Predicted protein sequences of Glyma03g28700

Limit To All Plant Sequences

>Glyma03g28700.1   sequence type=predicted peptide   gene model=Glyma03g28700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSQTQSQELHVVDFTDENTKKPGTDAWLSACSVVRTALEDNGFFMARYDKVGKELCDSVVSAVEELFDLPVETKAQKTSEKLFHGYLGQVSWLPLYESVGIDDPLTLLGCQKFGHIMWPEGNHRFCESINEYSKLLGELDHMAKRMVFESYGVDMQRCDSFIESNDYLLRCMMYRTPQTGEIDLGLQPHSDLTITSIVHQLNNLNGLEIKLKDGEWKGIDASPSSFVVMAGDAFNVWSNGRIRPCEHRVTMNAKKTRYSMGLFSFGGNKVMRIPEELVNKQHPLRYKPLFDHYEYLRFYDKEKIKEPYSRIQAHCGISTLQ*

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