Glyma03g28660 - SoyBase

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Report for Sequence Feature Glyma03g28660

Feature Type:	gene_model
Chromosome:	Gm03
Start:	36633988
stop:	36637947
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g28660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04040	AT	Annotation by Michelle Graham. TAIR10: Patatin-like phospholipase family protein \| chr5:1090346-1093003 FORWARD LENGTH=825	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0019433	GO-bp	Annotation by Michelle Graham. GO Biological Process: triglyceride catabolic process	SoyBase	N/A	ISS
GO:0044265	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular macromolecule catabolic process	SoyBase	N/A	ISS
GO:0012511	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: monolayer-surrounded lipid storage body	SoyBase	N/A	ISS
GO:0004806	GO-mf	Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG2214	KOG	Predicted esterase of the alpha-beta hydrolase superfamily	JGI		ISS
PTHR11711	Panther	ARF-RELATED	JGI		ISS
PTHR11711:SF1	Panther	ADP-RIBOSYLATION FACTOR	JGI		ISS
PF01734	PFAM	Patatin-like phospholipase	JGI		ISS
PF11815	PFAM	Domain of unknown function (DUF3336)	JGI		ISS
UniRef100_G7IDS5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Patatin-like phospholipase domain-containing protein n=1 Tax=Medicago truncatula RepID=G7IDS5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JN82	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JN82_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g28660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28660

Paralog	Evidence	Comments
Glyma19g31410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g130900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g28660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g28660

Limit To All Plant Sequences

>Glyma03g28660.1   sequence type=CDS   gene model=Glyma03g28660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGATCATATTAGTAATGAGGCCAGTGTTGACCGTTTTCCAATTGGTCCTTCTGGCATTCTTGGTAGGACAATTGCTTTCAGGGTTCTTTTTTGCAAGTCTATCTCACATTTTAGGCACCACATATTTATTGTGTTGTTAGATCTCTTCTATAGGTTTAGGGGGGGTTTGGCATCCTTTATATCATGGTTGCATCCCAGGAACCCTCAAGGGATATTGGCAATGATGACAATTGTTGCTTTCTTGTTGAAACGATACACAAATGTGAAATCAAGGGCTGAAATGGCATATAGGAGGAAGTTTTGGAGAAACATGATGAGAAGTGCTTTGACCTATGAGGAGTGGGCTCATGCAGCTAAGATGCTTGATAAAGAGACAACAAAGATGAATGAATCAGACCTTTATGATGTGGAATTGGTGAGGAACAAGCTTCAAGAGCTCCGCCACCGTCGACAAGAGGGATCTCTCGGAGATATAATGTTTTTTATGCGTGCCGATCTTATTAGAAATTTAGGTAATATGTGTAACCCTGAACTACACAAGGGTAGGCTTCAGGTGCCTAAATTAATCAAGGAGTACATTGATGAAGTAACGACTCAATTGAGAATGGTCTGTGATTCTGATTCAGAGGAGCTATCATTGGAAGAAAAGCTTGCTTTCATGCATGAAACTAGGCATGCATTTGGGAGGACTGCTTTGCTGTTAAGTGGGGGTGCCTCTCTTGGAGCTTCTCATGTGGGTGTAGTTAAAACACTGGTAGAACATAAACTCATGCCTAGGATAATTGCTGGTTCAAGTGTGGGATCCATTATGTGTGCTGTTGTTGCCACTAGGACTTGGCCTGAGCTCCAGAGCTTTTTTGAGGATTCATGGCACTCATTGCAATTTTTTGATCAAATGGGTGGGATTTTTGCAGTTGTTAAGAGAGTCACAACATTGGGTGCTGTTCATGAGATCAGACAGTTGCAAATGATGTTGAGGCATCTAACAAGCAACCTTACATTTCAAGAAGCTTATGACATGACAGGCAGAATTCTTGGGATTACTGTTTGTTCCCCAAGGAAGCATGAACCGCCTAGATGTCTTAACTACTTGACTTCACCCCATGTGGTTATATGGAGTGCAGTAACCGCTTCTTGTGCCTTTCCTGGCCTTTTTGAGGCTCAAGAATTGATGGCAAAGGATAGAAGTGGAGAGATTGTTCCTTACCACCCTCCTTTTAACTTAGGCCCTGAAGAGGGCTCCACACCAGTGCGCCGTTGGAGGGATGGTAGCTTGGAGATTGATTTACCTATGATGCAGTTGAAAGAACTATTCAATGTCAATCATTTTATAGTTAGTCAGGCCAACCCTCATATTGCACCACTATTGAGATTGAAAGAATTTGTGCGGACTTATGGGGGCAACTTTGCTGCCAAGCTTGCTCATCTTGTGGAGATGGAGGTGAAACATAGGTGTCATCAAATACTGGAACTTGGTTTTCCATTAGGTGGACTTGCTAAATTGTTTGCTCAAGACTGGGAAGGTGATGTGACTGTTGTTATTCCCGCAACTCTTGCTCAGTACACCAAAATTATACAGAACCCTTCTTATGGAGAGCTTCAAAAGGCAGCCAACCAAGGGAGAAGATGTACCTGGGAGAAACTTTCAGCCATAAAAGCAAATTGTGGCATTGAGCTTGCTCTTGATGAGTGTGTTGTGATTCTCAATCATATGAGAAGACTAAAGAGAATTGCTGAGAGAGCTGCTTCTGCCTCTCATGGTTTGTCCAGCACTGTCAGGTTCAGTGCTTCAAAAAGAATTCCTTCGTGGAATTGCATTGCACGAGAGAATTCGACCGGCTCCCTTGAGGACCTTACTGATGTTGCCTCCTCATTGCATCAAGGCATCGGCAGTTCCAGCAGAGCCAATGGCAAAACTTGGAAGACCCACCGTGGCATACATGATGGAAGTGACAGTGACTCTGAAAGTGTTGATTTGCATTCTTGGACAAGAACTGGCGGGCCTTTGATGAGAACTACTTCAGCAAATATGTTCGTTGATTTTCTCCAAAACTTAGAGGTTGATACGGATCCTAATAAAGGCTTAGTGAGTCACACTATCCATAATGATTTTCAGTATCATAGCCCCAGGCTCACAACACTAGATAGGAACTCTGATAGCACAGAATCTGAGCCAAGGGAAACTGGCAACAGGGTTGTCAATGTGTCCAGCATACTTGTGACCGAAGGTGATCTTCTGCAGCCTGAAAGGATCCATAATGGGATTGTGTTTAATGTTGTCAAGAAAGAAGACTTGTCACCCTTAAGTAGTAGCAGTCATGGTTTTGAAAATTACAACATTGAAGTTGCTGAATGTGTCCAAGATGAGTGTCCAGGGAAGGAGATAGATGCTGCTAGCTCTGCATCTGAACACGGAGATGATGAAGAATCCATGCCAGCCAGGTCCTTAACTGACATGCCAGATTACAATTCCATTGATCATCATTCGGGCACAGATTCGGGTATGGATCAAAGCATTGTTGACAGTTAG

Predicted protein sequences of Glyma03g28660

Limit To All Plant Sequences

>Glyma03g28660.1   sequence type=predicted peptide   gene model=Glyma03g28660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMDHISNEASVDRFPIGPSGILGRTIAFRVLFCKSISHFRHHIFIVLLDLFYRFRGGLASFISWLHPRNPQGILAMMTIVAFLLKRYTNVKSRAEMAYRRKFWRNMMRSALTYEEWAHAAKMLDKETTKMNESDLYDVELVRNKLQELRHRRQEGSLGDIMFFMRADLIRNLGNMCNPELHKGRLQVPKLIKEYIDEVTTQLRMVCDSDSEELSLEEKLAFMHETRHAFGRTALLLSGGASLGASHVGVVKTLVEHKLMPRIIAGSSVGSIMCAVVATRTWPELQSFFEDSWHSLQFFDQMGGIFAVVKRVTTLGAVHEIRQLQMMLRHLTSNLTFQEAYDMTGRILGITVCSPRKHEPPRCLNYLTSPHVVIWSAVTASCAFPGLFEAQELMAKDRSGEIVPYHPPFNLGPEEGSTPVRRWRDGSLEIDLPMMQLKELFNVNHFIVSQANPHIAPLLRLKEFVRTYGGNFAAKLAHLVEMEVKHRCHQILELGFPLGGLAKLFAQDWEGDVTVVIPATLAQYTKIIQNPSYGELQKAANQGRRCTWEKLSAIKANCGIELALDECVVILNHMRRLKRIAERAASASHGLSSTVRFSASKRIPSWNCIARENSTGSLEDLTDVASSLHQGIGSSSRANGKTWKTHRGIHDGSDSDSESVDLHSWTRTGGPLMRTTSANMFVDFLQNLEVDTDPNKGLVSHTIHNDFQYHSPRLTTLDRNSDSTESEPRETGNRVVNVSSILVTEGDLLQPERIHNGIVFNVVKKEDLSPLSSSSHGFENYNIEVAECVQDECPGKEIDAASSASEHGDDEESMPARSLTDMPDYNSIDHHSGTDSGMDQSIVDS*

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