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Report for Sequence Feature Glyma03g28650

Feature Type:gene_model
Chromosome:Gm03
Start:36611580
stop:36613204
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g28650
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G10190AT Annotation by Michelle Graham. TAIR10: Calcium-binding EF-hand family protein | chr3:3155309-3155938 FORWARD LENGTH=209 SoyBaseE_val: 2.00E-57ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005509GO-mf Annotation by Michelle Graham. GO Molecular Function: calcium ion binding SoyBaseN/AISS
KOG0027 KOG Calmodulin and related proteins (EF-Hand superfamily) JGI ISS
PTHR10891Panther CALMODULIN JGI ISS
PTHR10891:SF149Panther CALMODULIN-RELATED JGI ISS
PF00036PFAM EF hand JGI ISS
UniRef100_B9T832UniRef Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding allergen Ole e, putative n=1 Tax=Ricinus communis RepID=B9T832_RICCO SoyBaseE_val: 7.00E-63ISS
UniRef100_I1JN81UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JN81_SOYBN SoyBaseE_val: 2.00E-155ISS

Expression Patterns of Glyma03g28650
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28650
ParalogEvidenceComments
Glyma19g31395 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28650 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g130800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g28650
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g28650
>Glyma03g28650.1   sequence type=CDS   gene model=Glyma03g28650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTCATTAGCACCATCAACCCCAAAAACCTCAAACTAAGCCCCAAACGCTTCTTTCGTAAAAAGGAACCATCTTTAGTCTCACGCTCCGACCCGCCTTCTTTCGGATCCGGATCCTCCTCCGTTGACTCTTCCACCGCAAATCACAAACCTTCCCCCGGTAACCAAACTCCGACCAGCGTTCTCCCGGACGTCTCCGGCGAGTGGTCCGAGGTCGCCGCCGCCGCCGTTGACGTGCGGTGGGACCTCGCGCAGGCCTTGCGCCTCATCGACCGCGACAACGACGGCGTCGTCACGCGCCAGGACCTCGAGTCGCTTCTCACGCGCCTTGGCGCGTCGCCGAGCCCCGGCGACGTGGCGCTCATGCTCGGCGAGGTCGACGGCGACGGCATCACGGTTGAGTCTCTCATGAGCTACGTCGGGTCGGGTCTCGAAACTGGGTCGGATCCCGACGAGCTCAAAGAAGCCTTCGAGGTGTTCGACACGGATCGAGACGGGAGGATCTCGGCGGAGGAGCTGCTTAGGGTTTTCAAAGCCATCGGCGACGAACGGTGCACGTTAGAGGAGTGCCGGCGCATGATAGAGGGAGTGGACAGAAACGGGGACGGGTTCGTCTGCTTCGAGGACTTTTCTCGTATGATGGACCTGCAGCGGTGA
Predicted protein sequences of Glyma03g28650
>Glyma03g28650.1   sequence type=predicted peptide   gene model=Glyma03g28650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLISTINPKNLKLSPKRFFRKKEPSLVSRSDPPSFGSGSSSVDSSTANHKPSPGNQTPTSVLPDVSGEWSEVAAAAVDVRWDLAQALRLIDRDNDGVVTRQDLESLLTRLGASPSPGDVALMLGEVDGDGITVESLMSYVGSGLETGSDPDELKEAFEVFDTDRDGRISAEELLRVFKAIGDERCTLEECRRMIEGVDRNGDGFVCFEDFSRMMDLQR*






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