Glyma03g28630 - SoyBase

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Report for Sequence Feature Glyma03g28630

Feature Type:	gene_model
Chromosome:	Gm03
Start:	36557837
stop:	36560133
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g28630

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56970	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr3:21084204-21085094 REVERSE LENGTH=253	SoyBase	E_val: 5.00E-52	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0055072	GO-bp	Annotation by Michelle Graham. GO Biological Process: iron ion homeostasis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR13935	Panther	ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED	JGI		ISS
PTHR13935:SF2	Panther	ACHAETE-SCUTE HOMOLOG 2	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_G7KRQ0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor ORG2 n=1 Tax=Medicago truncatula RepID=G7KRQ0_MEDTR	SoyBase	E_val: 8.00E-73	ISS
UniRef100_I1JN79	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JN79_SOYBN	SoyBase	E_val: 2.00E-176	ISS

Expression Patterns of Glyma03g28630

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma03g28630 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g130600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g28630

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g28630

Limit To All Plant Sequences

>Glyma03g28630.1   sequence type=CDS   gene model=Glyma03g28630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCTTTGTTTTCCCCTCCGGTGTTCTCAACCAAGGGATGGTTCTTAGAAGAAGAGCCATTAAGCTATGATGTGTCTTCAGATTACTCATTTCCCTATCAATTTTTTGCACCACAGACACAGATTGAACTTGAAATAGAAAGGTCCTCTGCACCATCCCCTGAAGACCCTGCCATGGTCAAAAAGCTTAGCCACAACGCTAGTGAACGTGATCGCCGCAAGAAGGTTAATGACTTGGTTTCTTCACTTCGTTCACTTCTTCCTGGGCCAGATCAAACGAAAAAAATGAGCATTCCAGCTACAGTTTCGCGAGTTTTAAAATACATACCTGAGTTACAACATCAAGTGCAAGCACTAACTAAGAAAAAAGAGGAGCTTCTGTGCAGAATTTCAAAAAATCTCAAAGGAGATTCGGTGAACAAAGAATCTCAAAGGAGAATTTCCCATCACAATTCTGATTTTGCTGTTTCAACTAGTAGGCTCAACGATTGTGAAGCTGTTGTTCACATTTCCTCTTATGAGGCTCACAAGGCTCCACTATCCGACATCTTGCAATGTTTAGAAAATAATGGCCTTTATTTGCTAAATGCTTCTTCCTCTGAAACTTTTGGAGGAAGGGTCTTCTACAACTTGCATTTCCAGGTGGAAAAAACTCATAGATTAGAGTCCGAAATTCTAACTGAGAAGCTTTTGTCAATATATGAGAAGCAAAGGATTTTCTAA

Predicted protein sequences of Glyma03g28630

Limit To All Plant Sequences

>Glyma03g28630.1   sequence type=predicted peptide   gene model=Glyma03g28630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVALFSPPVFSTKGWFLEEEPLSYDVSSDYSFPYQFFAPQTQIELEIERSSAPSPEDPAMVKKLSHNASERDRRKKVNDLVSSLRSLLPGPDQTKKMSIPATVSRVLKYIPELQHQVQALTKKKEELLCRISKNLKGDSVNKESQRRISHHNSDFAVSTSRLNDCEAVVHISSYEAHKAPLSDILQCLENNGLYLLNASSSETFGGRVFYNLHFQVEKTHRLESEILTEKLLSIYEKQRIF*

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