Glyma03g28600 - SoyBase

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Report for Sequence Feature Glyma03g28600

Feature Type:	gene_model
Chromosome:	Gm03
Start:	36536047
stop:	36540629
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g28600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41250	AT	Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr2:17200862-17202551 REVERSE LENGTH=290	SoyBase	E_val: 1.00E-130	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0046685	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008967	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoglycolate phosphatase activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG3085	KOG	Predicted hydrolase (HAD superfamily)	JGI		ISS
PTHR12725	Panther	HALOACID DEHALOGENASE-LIKE HYDROLASE	JGI		ISS
PTHR12725:SF5	Panther	HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN CONTAINING 3	JGI		ISS
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI		ISS
UniRef100_G7KRP6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphoglycolate phosphatase n=1 Tax=Medicago truncatula RepID=G7KRP6_MEDTR	SoyBase	E_val: 1.00E-157	ISS
UniRef100_I1JN77	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JN77_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g28600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28600

Paralog	Evidence	Comments
Glyma19g31340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g130300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g28600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g28600

Limit To All Plant Sequences

>Glyma03g28600.1   sequence type=CDS   gene model=Glyma03g28600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACAATCGCTGCCAGGATTCTCGGTTCCAACTCAAGGCCAGCGGTCGCGCTCCGCCGCTTGCGGTGGCCGGCGTACTCCTCCGCCTCCGCGGTGGTGGCGGAGCCGGAGACCACGGAGGTGAAGGACTACGCCGATTACCGCCGCTCCCTGTACGGACAGATCACGCACAAGGCGCTCCTCGTCGACGCCGTTGGCACGCTCGTTCTCCCCTCGCAGCCCATGGCTCAGATATATAGAAAGATTGGAGAGAAGTATGGAGTGGAGTATTCGGAAGATGAGATACTGTTCAGATATAGAAGAGCGTATGGTCAGCCTTGGGGAAAATCTCGTCTCAGATATGTTAATGATGGTAGGCCCTTTTGGCAATACATAGTTAGTTATTCTACTGGCTGCTCAGATCCTCAATACTTTGAAGAACTTTATAACTATTATACGACAGACAAGGCATGGCACCTCAATGATCCTGGCGCAGAAGAAGTATTCAGAGCTCTTAGAAAATCAGGTGTGAAATTAGCTGTTGTGTCAAACTTTGACACTAGATTAAGACCTCTCCTGCGGGCATTAAATTGTGACAATTGGTTTGATGCAGTAGCAGTGTCAGCTGAGGTTGCGGCGGAGAAACCAAATCCAACTATATTTCTCAAAGCATGTGAATTATTGGATGTAAAACCTGAGGATGCTGTTCATGTTGGGGATGACCGCAGAAATGATATATGGGGTGCCAGGGATGCTGGCTGTGATGCTTGGCTTTGGGGAAGCGATGTTCACTCCTTTAAGGAGGTAGCACAGAGGATTGGGGTTCAGGTCTGA

Predicted protein sequences of Glyma03g28600

Limit To All Plant Sequences

>Glyma03g28600.1   sequence type=predicted peptide   gene model=Glyma03g28600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATIAARILGSNSRPAVALRRLRWPAYSSASAVVAEPETTEVKDYADYRRSLYGQITHKALLVDAVGTLVLPSQPMAQIYRKIGEKYGVEYSEDEILFRYRRAYGQPWGKSRLRYVNDGRPFWQYIVSYSTGCSDPQYFEELYNYYTTDKAWHLNDPGAEEVFRALRKSGVKLAVVSNFDTRLRPLLRALNCDNWFDAVAVSAEVAAEKPNPTIFLKACELLDVKPEDAVHVGDDRRNDIWGARDAGCDAWLWGSDVHSFKEVAQRIGVQV*

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