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Report for Sequence Feature Glyma03g28500

Feature Type:gene_model
Chromosome:Gm03
Start:36420965
stop:36424457
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g28500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G57090AT Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:21128627-21129981 FORWARD LENGTH=170 SoyBaseE_val: 6.00E-81ISS
GO:0007005GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrion organization SoyBaseN/AISS
GO:0016559GO-bp Annotation by Michelle Graham. GO Biological Process: peroxisome fission SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005777GO-cc Annotation by Michelle Graham. GO Cellular Compartment: peroxisome SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG3364 KOG Membrane protein involved in organellar division JGI ISS
PTHR13247Panther TETRATRICOPEPTIDE REPEAT PROTEIN 11 (TPR REPEAT PROTEIN 11) JGI ISS
UniRef100_A2Q2Z4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial fission 1 protein n=1 Tax=Medicago truncatula RepID=A2Q2Z4_MEDTR SoyBaseE_val: 9.00E-104ISS
UniRef100_C6T3T8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T3T8_SOYBN SoyBaseE_val: 2.00E-118ISS

Expression Patterns of Glyma03g28500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28500
ParalogEvidenceComments
Glyma19g31240 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28500 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g129400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g28500
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g28500
>Glyma03g28500.1   sequence type=CDS   gene model=Glyma03g28500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCCAAGTTCGGAAGCCTCTTCGAATCCATCGGAAACTTCTTCACCGGCGGTGAACAGATCCCGTGGTGTGACCGTGACGTCATCGCTGGCTGTGAGAGAGAAGTTGCAGAGGCTGCTAATGGTGACTCTGAGGAGCGGAAGAATGAGAGTATAATGAGGCTGTCATGGGCTCTTGTTCATTCAAGGCAAAAGGAAGATATTCAGCGCGGGATAGCCATGCTTGAAACTTCCTTGGGCAATGATAAAAGTCCTTTGCATCAAAGAGAGAAGCTTTATCTTCTGGCTGTTGGTTACTATAGAAGTAATGACTATGGAAGGAGCCGGCAGCTTGTGGAGCAATGTTTGGAGATTGCACCTGATTGGAGGCAGGCACTATCCCTTAAGAAAATAGTTGAAGATCGAATTGCTAAAGATGGTGTAATAGGAATTGGCATCACTGCAACAGCTGTGGGACTTATAGTTGGTGGCATTGCTACGGCACTGGCCAGGAGGAATTGA
Predicted protein sequences of Glyma03g28500
>Glyma03g28500.1   sequence type=predicted peptide   gene model=Glyma03g28500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAKFGSLFESIGNFFTGGEQIPWCDRDVIAGCEREVAEAANGDSEERKNESIMRLSWALVHSRQKEDIQRGIAMLETSLGNDKSPLHQREKLYLLAVGYYRSNDYGRSRQLVEQCLEIAPDWRQALSLKKIVEDRIAKDGVIGIGITATAVGLIVGGIATALARRN*






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