Glyma03g28470 - SoyBase

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Report for Sequence Feature Glyma03g28470

Feature Type:	gene_model
Chromosome:	Gm03
Start:	36402499
stop:	36404651
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g28470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10230	AT	Annotation by Michelle Graham. TAIR10: lycopene cyclase \| chr3:3164340-3165845 REVERSE LENGTH=501	SoyBase	E_val: 0	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0016120	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotene biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016705	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	SoyBase	N/A	ISS
GO:0045436	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lycopene beta cyclase activity	SoyBase	N/A	ISS
PTHR10617	Panther	FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE	JGI		ISS
PTHR10617:SF31	Panther	gb def: bacteriochlorophyll synthase 43 kda subunit methanothermobacter thermautotrophi	JGI		ISS
PF05834	PFAM	Lycopene cyclase protein	JGI		ISS
UniRef100_F1C4C1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lycopene beta-cyclase n=1 Tax=Phaseolus vulgaris RepID=F1C4C1_PHAVU	SoyBase	E_val: 0	ISS
UniRef100_I1JN65	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JN65_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g28470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28470

Paralog	Evidence	Comments
Glyma19g31220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g128900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g28470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g28470

Limit To All Plant Sequences

>Glyma03g28470.2   sequence type=transcript   gene model=Glyma03g28470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATGGTTGAACCAATTGCTATTTGGCATCTGTAGTTGTAAAGTATGGTGACCATTGGATAAACCAACACCACCAATTTCCATTTTTATAAGAAAATAAAAAATGACCCACTTGGAATTGTCGCTGACGAGGAGTGTCTCGTGGCCACACGAGCTTTACCACTACTAGAGCGGCAAAACCACTGTTCTTAGCTTCTGCATGTGAAGTGAATTCTTGCAATGCTTCCTTTTCTCCACGTGTGACCCAGATGGTGTTTTGAGTATTTGTTTTGAGATTCATTCAGTATTTTGAGAGATTTGTATGATAAATATGGATACTTTGCTCAAAACACCCAACAAGCTTGAGTTTTTGCACCCACTTCACGGTTACTCGGAAAAATTGAGCAGTTCAGGTTCCTCTAGGGTGCAAAATCAGTATTTTGGGTTTGGTTCCAAGAAACCAACTGTGAGATGGGGTAAATGTGGTAACTTGAGGGCTAGTAGCAGTGCCCTTTTGGAGCTTGTTCCTGAATTCAAGAAGGAGAATCTGGATTTTGAACTTCCTTTGTATGATTCCTCAAAGGGTGCTATGGTTGATCTTGCTGTTGTGGGAGGGGGCCCTGCAGGGCTTGCAGTTGCACAGCAGGTTTCTGAGGCGGGGCTTTCGGTTTGTGCCATTGATCCAAACCCTAGATTGATTTGGCCCAATAATTATGGGGTTTGGGTGGATGAGTTTGAGGCCATGGATTTGCTTGATTGCCTTGACACCATTTGGTCTGGCGCGGTTGTCTTCATTGACGACAAAACAAAGAAGGATCTAGATAGGCCTTATGGGAGGGTCAACAGGAAGCTGCTGAAGTCCAAGATGCTGCAGAAATGCATATCGAATGGCGTCAAGTTTCACCAAGCGAAAGTTATCAAGGTTATTCATGAGGAGGCCAAATCTTTGTTGATTTGTAATGATGGTGTCACTGTTCATGCCACTGTGGTTCTCGATGCAACTGGCTTTTCGAGATGCCTTGTTCAGTATGATAAACCGTATAATCCGGGATACCAAGTTGCTTATGGGATTTTGGCCGAGGTTGATGAACACCCATTTGATGTAGATAAAATGCTTTTTATGGACTGGAGAGATTCACATCTGGACAATGACATGGAACTGAAGCAGAGAAATAGTAGAATACCCACTTTTCTATATGCGATGCCCTTTTCATCCACTAAGATATTTCTTGAAGAAACTTCTCTTGTGGCACGCCCTGGGTTGCGAATGGATGATATACAAGAAAGAATGGCTGCTAGGTTGAAACACTTGGGTATTAGAGTGAAAAGCATTGAAGAAGATGAGCATTGTGTCATTCCAATGGGTGGCCCCCTCCCAGTTCTCCCCCAAAGAGTTGTTGGAATTGGCGGTACCGCAGGAATGGTGCATCCTTCAACAGGGTATATGGTAGCAAGGACCCTAGCTGCGGCTCCTATTGTTGCTAATTCTATTGTTCAGTGCCTTGGTTCTGATAGAGGTTTTTCAGGAGATGAAATATCTGCACAAGTGTGGAAAGATTTATGGCCTATCCAAAGGAGGCGACAAAGGGAGTTCTTCTGTTTTGGTATGGACATCTTACTCAAGCTTGATTTACCAGGCACAAAGAGATTTTTTGATGCGTTTTTTGATCTGGAACCTCATTACTGGCATGGATTCTTATCATCAAGACTGTTTCTTCATGAGCTCTTATTTTTTGGACTCTCTCTATTTTCTTATGCTTCTAATACATCTAGGGTAGAGATTATGGCAAAGGGAACTCTTCCTTTGGTAAACATGATCAACAACTTGGTAAAAGATACAGAATAATAGACTTCATTCTATTCTGTTGTGTATGCTACCTATGGTAAAAGATACAGAATAAGACGACTTCCTTCTACTCATGTTATAGATTTCTGATAATGTATAATTGTGTATATTTATTTATTCTTTGCTCACCTTAATTCACTTTGGAGAAAAAGTTCCCAAACTTTCTCTATTTTAAGCCTATCATTGTTTGCATTTGCAATGGATAAGAGGAAAAGAACTGGTTGGCTATTGTTGGTTAATGTT

Coding sequences of Glyma03g28470

Limit To All Plant Sequences

>Glyma03g28470.1   sequence type=CDS   gene model=Glyma03g28470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAAATATGGATACTTTGCTCAAAACACCCAACAAGCTTGAGTTTTTGCACCCACTTCACGGTTACTCGGAAAAATTGAGCAGTTCAGGTTCCTCTAGGGTGCAAAATCAGTATTTTGGGTTTGGTTCCAAGAAACCAACTGTGAGATGGGGTAAATGTGGTAACTTGAGGGCTAGTAGCAGTGCCCTTTTGGAGCTTGTTCCTGAATTCAAGAAGGAGAATCTGGATTTTGAACTTCCTTTGTATGATTCCTCAAAGGGTGCTATGGTTGATCTTGCTGTTGTGGGAGGGGGCCCTGCAGGGCTTGCAGTTGCACAGCAGGTTTCTGAGGCGGGGCTTTCGGTTTGTGCCATTGATCCAAACCCTAGATTGATTTGGCCCAATAATTATGGGGTTTGGGTGGATGAGTTTGAGGCCATGGATTTGCTTGATTGCCTTGACACCATTTGGTCTGGCGCGGTTGTCTTCATTGACGACAAAACAAAGAAGGATCTAGATAGGCCTTATGGGAGGGTCAACAGGAAGCTGCTGAAGTCCAAGATGCTGCAGAAATGCATATCGAATGGCGTCAAGTTTCACCAAGCGAAAGTTATCAAGGTTATTCATGAGGAGGCCAAATCTTTGTTGATTTGTAATGATGGTGTCACTGTTCATGCCACTGTGGTTCTCGATGCAACTGGCTTTTCGAGATGCCTTGTTCAGTATGATAAACCGTATAATCCGGGATACCAAGTTGCTTATGGGATTTTGGCCGAGGTTGATGAACACCCATTTGATGTAGATAAAATGCTTTTTATGGACTGGAGAGATTCACATCTGGACAATGACATGGAACTGAAGCAGAGAAATAGTAGAATACCCACTTTTCTATATGCGATGCCCTTTTCATCCACTAAGATATTTCTTGAAGAAACTTCTCTTGTGGCACGCCCTGGGTTGCGAATGGATGATATACAAGAAAGAATGGCTGCTAGGTTGAAACACTTGGGTATTAGAGTGAAAAGCATTGAAGAAGATGAGCATTGTGTCATTCCAATGGGTGGCCCCCTCCCAGTTCTCCCCCAAAGAGTTGTTGGAATTGGCGGTACCGCAGGAATGGTGCATCCTTCAACAGGGTATATGGTAGCAAGGACCCTAGCTGCGGCTCCTATTGTTGCTAATTCTATTGTTCAGTGCCTTGGTTCTGATAGAGGTTTTTCAGGAGATGAAATATCTGCACAAGTGTGGAAAGATTTATGGCCTATCCAAAGGAGGCGACAAAGGGAGTTCTTCTGTTTTGGTATGGACATCTTACTCAAGCTTGATTTACCAGGCACAAAGAGATTTTTTGATGCGTTTTTTGATCTGGAACCTCATTACTGGCATGGATTCTTATCATCAAGACTGTTTCTTCATGAGCTCTTATTTTTTGGACTCTCTCTATTTTCTTATGCTTCTAATACATCTAGGGTAGAGATTATGGCAAAGGGAACTCTTCCTTTGGTAAACATGATCAACAACTTGGTAAAAGATACAGAATAA

>Glyma03g28470.2   sequence type=CDS   gene model=Glyma03g28470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAAATATGGATACTTTGCTCAAAACACCCAACAAGCTTGAGTTTTTGCACCCACTTCACGGTTACTCGGAAAAATTGAGCAGTTCAGGTTCCTCTAGGGTGCAAAATCAGTATTTTGGGTTTGGTTCCAAGAAACCAACTGTGAGATGGGGTAAATGTGGTAACTTGAGGGCTAGTAGCAGTGCCCTTTTGGAGCTTGTTCCTGAATTCAAGAAGGAGAATCTGGATTTTGAACTTCCTTTGTATGATTCCTCAAAGGGTGCTATGGTTGATCTTGCTGTTGTGGGAGGGGGCCCTGCAGGGCTTGCAGTTGCACAGCAGGTTTCTGAGGCGGGGCTTTCGGTTTGTGCCATTGATCCAAACCCTAGATTGATTTGGCCCAATAATTATGGGGTTTGGGTGGATGAGTTTGAGGCCATGGATTTGCTTGATTGCCTTGACACCATTTGGTCTGGCGCGGTTGTCTTCATTGACGACAAAACAAAGAAGGATCTAGATAGGCCTTATGGGAGGGTCAACAGGAAGCTGCTGAAGTCCAAGATGCTGCAGAAATGCATATCGAATGGCGTCAAGTTTCACCAAGCGAAAGTTATCAAGGTTATTCATGAGGAGGCCAAATCTTTGTTGATTTGTAATGATGGTGTCACTGTTCATGCCACTGTGGTTCTCGATGCAACTGGCTTTTCGAGATGCCTTGTTCAGTATGATAAACCGTATAATCCGGGATACCAAGTTGCTTATGGGATTTTGGCCGAGGTTGATGAACACCCATTTGATGTAGATAAAATGCTTTTTATGGACTGGAGAGATTCACATCTGGACAATGACATGGAACTGAAGCAGAGAAATAGTAGAATACCCACTTTTCTATATGCGATGCCCTTTTCATCCACTAAGATATTTCTTGAAGAAACTTCTCTTGTGGCACGCCCTGGGTTGCGAATGGATGATATACAAGAAAGAATGGCTGCTAGGTTGAAACACTTGGGTATTAGAGTGAAAAGCATTGAAGAAGATGAGCATTGTGTCATTCCAATGGGTGGCCCCCTCCCAGTTCTCCCCCAAAGAGTTGTTGGAATTGGCGGTACCGCAGGAATGGTGCATCCTTCAACAGGGTATATGGTAGCAAGGACCCTAGCTGCGGCTCCTATTGTTGCTAATTCTATTGTTCAGTGCCTTGGTTCTGATAGAGGTTTTTCAGGAGATGAAATATCTGCACAAGTGTGGAAAGATTTATGGCCTATCCAAAGGAGGCGACAAAGGGAGTTCTTCTGTTTTGGTATGGACATCTTACTCAAGCTTGATTTACCAGGCACAAAGAGATTTTTTGATGCGTTTTTTGATCTGGAACCTCATTACTGGCATGGATTCTTATCATCAAGACTGTTTCTTCATGAGCTCTTATTTTTTGGACTCTCTCTATTTTCTTATGCTTCTAATACATCTAGGGTAGAGATTATGGCAAAGGGAACTCTTCCTTTGGTAAACATGATCAACAACTTGGTAAAAGATACAGAATAA

Predicted protein sequences of Glyma03g28470

Limit To All Plant Sequences

>Glyma03g28470.1   sequence type=predicted peptide   gene model=Glyma03g28470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MINMDTLLKTPNKLEFLHPLHGYSEKLSSSGSSRVQNQYFGFGSKKPTVRWGKCGNLRASSSALLELVPEFKKENLDFELPLYDSSKGAMVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDTIWSGAVVFIDDKTKKDLDRPYGRVNRKLLKSKMLQKCISNGVKFHQAKVIKVIHEEAKSLLICNDGVTVHATVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVDEHPFDVDKMLFMDWRDSHLDNDMELKQRNSRIPTFLYAMPFSSTKIFLEETSLVARPGLRMDDIQERMAARLKHLGIRVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQCLGSDRGFSGDEISAQVWKDLWPIQRRRQREFFCFGMDILLKLDLPGTKRFFDAFFDLEPHYWHGFLSSRLFLHELLFFGLSLFSYASNTSRVEIMAKGTLPLVNMINNLVKDTE*

>Glyma03g28470.2   sequence type=predicted peptide   gene model=Glyma03g28470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MINMDTLLKTPNKLEFLHPLHGYSEKLSSSGSSRVQNQYFGFGSKKPTVRWGKCGNLRASSSALLELVPEFKKENLDFELPLYDSSKGAMVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDTIWSGAVVFIDDKTKKDLDRPYGRVNRKLLKSKMLQKCISNGVKFHQAKVIKVIHEEAKSLLICNDGVTVHATVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVDEHPFDVDKMLFMDWRDSHLDNDMELKQRNSRIPTFLYAMPFSSTKIFLEETSLVARPGLRMDDIQERMAARLKHLGIRVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQCLGSDRGFSGDEISAQVWKDLWPIQRRRQREFFCFGMDILLKLDLPGTKRFFDAFFDLEPHYWHGFLSSRLFLHELLFFGLSLFSYASNTSRVEIMAKGTLPLVNMINNLVKDTE*

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