SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10210 | AT | Annotation by Michelle Graham. TAIR10: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr3:3160416-3161579 REVERSE LENGTH=237 | SoyBase | E_val: 2.00E-122 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2633 | KOG | Hismacro and SEC14 domain-containing proteins | JGI | ISS | |
| PTHR11106 | Panther | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED | JGI | ISS | |
| PTHR11106:SF1 | Panther | gb def: cdna flj12480 fis, clone nt2rm1001066. 3/101 [dictyostelium discoideum] | JGI | ISS | |
| UniRef100_C6T5K6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T5K6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2HW59 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cellular retinaldehyde-binding/triple function, C-terminal n=1 Tax=Medicago truncatula RepID=Q2HW59_MEDTR | SoyBase | E_val: 1.00E-147 | ISS |
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Glyma03g28460 not represented in the dataset |
Glyma03g28460 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g31200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g128800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g28460.1 sequence type=CDS gene model=Glyma03g28460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGGTTCATCGGAGGATTTCTCGGTGGTGGTGCTGGCGTCGGACCTCGGCGTCGATGCGCGACCTTTCCTCGAACACGATCAACAGCAAGAAGAAGAGAATTGGCACGACTGTTCCCAGTACCTCTCCCCCGACGAGGACTTCTCCGATCTCGATCAGTTGCAATTCCTCCGCCTCCAAGGCTCCGACAAGAACTCCAATCGCATTCTCCGCATCGTCGGCAAGTACTTTCCCGCAACTGTTGTGAGTGCGGAGCGGCTCAAGCGGTATGTGTTCAACAAAATTTGCAGTGAGTTGCCTGAGGGGCCCTTCTGTATTGCTTACATGCACAGCACTGTTCAGAAGGAGGATAATTCCCCTGGCATCACCATCTTGAGGTGGATCTATGAAGAACTTCCTGCTGATTTCAAGGACAGGCTTCAGACTGTGTATTTCGTCCACCCTGGCTTTCGGTCCCGGCTAGTCATCGCTACTCTTGGCCGCTTTTTCTTGAGTGGAGGATTATATTGGAAGATCAAGTATGTAAGCCGGCTTCAGTACCTTTGGGATGACATAAAGAAAGGAGAGATTGAGATACCGGATTTTGTGAAAAGTCATGATGATATTCTGGAGAATAGACCACTCACTGATTATGGCATTGAACCTGACCCCTTTCACTTGACTGGGATGCCTTCAACTACCTACTCATTTGGAAAGTACGAGGAGAGATGGGCGGGAAGGAATTATGTGTCTTAG
>Glyma03g28460.1 sequence type=predicted peptide gene model=Glyma03g28460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGGSSEDFSVVVLASDLGVDARPFLEHDQQQEEENWHDCSQYLSPDEDFSDLDQLQFLRLQGSDKNSNRILRIVGKYFPATVVSAERLKRYVFNKICSELPEGPFCIAYMHSTVQKEDNSPGITILRWIYEELPADFKDRLQTVYFVHPGFRSRLVIATLGRFFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPDFVKSHDDILENRPLTDYGIEPDPFHLTGMPSTTYSFGKYEERWAGRNYVS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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