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Report for Sequence Feature Glyma03g28440

Feature Type:gene_model
Chromosome:Gm03
Start:36372878
stop:36376597
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g28440
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G41370AT Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein / BTB/POZ domain-containing protein | chr2:17238019-17240203 REVERSE LENGTH=491 SoyBaseE_val: 0ISS
GO:0009864GO-bp Annotation by Michelle Graham. GO Biological Process: induced systemic resistance, jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009944GO-bp Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis SoyBaseN/AISS
GO:0009954GO-bp Annotation by Michelle Graham. GO Biological Process: proximal/distal pattern formation SoyBaseN/AISS
GO:0010227GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ abscission SoyBaseN/AISS
GO:0010254GO-bp Annotation by Michelle Graham. GO Biological Process: nectary development SoyBaseN/AISS
GO:0010434GO-bp Annotation by Michelle Graham. GO Biological Process: bract formation SoyBaseN/AISS
GO:0010582GO-bp Annotation by Michelle Graham. GO Biological Process: floral meristem determinacy SoyBaseN/AISS
GO:0048439GO-bp Annotation by Michelle Graham. GO Biological Process: flower morphogenesis SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF00023PFAM Ankyrin repeat JGI ISS
PF00651PFAM BTB/POZ domain JGI ISS
PF11900PFAM Domain of unknown function (DUF3420) JGI ISS
UniRef100_G8GTP2UniRef Annotation by Michelle Graham. Most informative UniRef hit: BTB/POZ ankyrin repeat protein n=1 Tax=Glycine max RepID=G8GTP2_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1JN61UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JN61_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g28440
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28440
ParalogEvidenceComments
Glyma19g31180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28440 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g128600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g28440
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g28440
>Glyma03g28440.1   sequence type=CDS   gene model=Glyma03g28440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCTTGAAGAGTCGCTAAGATCTCTTTCTCTTGATTACCTCAACCTCCTCATCAACGGGCAGGCCTTCAGCGACGTCACTTTCAGTGTGGAGGGCCGCCTGGTCCACGCGCACCGCTGCATACTCGCCGCCAGGAGCCTCTTCTTCAGGAAATTCTTCTGTGGGCCGGACGCGCCGTGCGGCCTCGACCCTGCCGGACCGCGAGGCGTTAACTCCTCGCGCTCCGGGGTAATCCCCGTCAACTCGGTGGGCTATGAGGTGTTTCTCCTCATGCTCCAGTTTCTCTACAGTGGCCAGGTCTCCATCGTGCCCCAGAAGCACGAGGCCAGGCCCAATTGCGGCGAGCGCGGCTGCTGGCACACGCATTGCACCTCCGCCGTCGATCTCGCCCTCGACACCCTCGCCGCCGCTAGATACTTTGGCGTCGAACCGCTCGCATTGCTCACTCAGAAACAACTGGCGAGCATGGTAGAGAAGGCTTCAATAGAGGATGTAATGAAAGTGCTGTTGGCATCAAGAAAGCAAGACATGCAGCAACTATGGGCAACATGTTCCCACTTGGTGGCAAAATCAGGTCTCCCACCAGAGGTTCTAGCAAAGCACCTCCCAATAGACATCGTGGCGAAAATCGAAGAGCTCCGTCTCAAATCCTCACTGGCACGCCGCTCATTGGTTCCTTCTCACCACCACCACCACCATCACCCCCACCACCACGCGGCGGCGGCCCTCGACCTCGAGGACCAGAAAATCCGGCGAATGAGGCGCGCCCTGGACTCCTCCGACGTGGAACTCGTGAAGCTAATGGTAATGGGAGAAGGCCTTAACTTAGATGAAGCACTGGCCTTACCCTACGCAGTGGAGAATTGCAGCAGGGAAGTGGTGAAGGCCTTACTGGAGCTTGGTGCAGCCGACGTTAACTACCCGTCGGGTCCCGCCGGGAAGACGCCGCTCCACATTGCGGCGGAGATGGTGTCTCCCGACATGGTGGCGGTCCTGCTGGACCACCACGCGGACCCGAACGTTAGAACAGTCGATGGGGTCACCCCTCTAGACATCCTCAGAACCCTAACCTCGGATTTTCTCTTTAAGGGTGCTGTCCCGGGATTGACCCACATTGAGCCCAATAAGCTGAGGCTGTGCTTGGAGCTTGTTCAATCCGCGGCTCTCGTCATGTCGCGGGAAGAAGGAAATAATGCTAACAACAACAACAATGGTCCTCATAGTTCTTCATCAGCAGCGCCTATATACCCTCCTCCAATGAACGAGGATCACAACAACAACAACAACAGCAGTAGCAGCAGCGGCAACAACAACATTGGTAACCTTAACTTGGATTCTAGGTTGGTGTATCTCAACCTTGGTGCCACTGCCTCAATGAGTTCGAGACTGGATAACGCTGAGGACGAGAGAGAAGCCATGAACCAAAACATGTACCATCATCACCACTCTCATGACTTCTAG
Predicted protein sequences of Glyma03g28440
>Glyma03g28440.1   sequence type=predicted peptide   gene model=Glyma03g28440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLEESLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDAPCGLDPAGPRGVNSSRSGVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEPLALLTQKQLASMVEKASIEDVMKVLLASRKQDMQQLWATCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKSSLARRSLVPSHHHHHHHPHHHAAAALDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPAGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNNANNNNNGPHSSSSAAPIYPPPMNEDHNNNNNSSSSSGNNNIGNLNLDSRLVYLNLGATASMSSRLDNAEDEREAMNQNMYHHHHSHDF*






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