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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G12250 | AT | Annotation by Michelle Graham. TAIR10: TGACG motif-binding factor 6 | chr3:3906636-3908583 FORWARD LENGTH=303 | SoyBase | E_val: 5.00E-125 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0030968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR22952 | Panther | CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR22952:SF52 | Panther | OS01G0279900 PROTEIN | JGI | ISS | |
| PTHR22952:SF53 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00170 | PFAM | bZIP transcription factor | JGI | ISS | |
| UniRef100_G7KQS1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: TGA transcription factor n=3 Tax=Medicago truncatula RepID=G7KQS1_MEDTR | SoyBase | E_val: 2.00E-157 | ISS |
| UniRef100_UPI00023379A7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023379A7 related cluster n=1 Tax=unknown RepID=UPI00023379A7 | SoyBase | E_val: 0 | ISS |
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Glyma03g28400 not represented in the dataset |
Glyma03g28400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g128200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g28400.3 sequence type=transcript gene model=Glyma03g28400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTAGTGCAGAAACTTTAAAGGGACGGGTTCAGCATACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAATGGCATATGTGCAACAACTAGAGAGCAGTAGGTTGAAACTGATATCGCCAGCAGGTTTGGGAATATTTATTTCAAGTACTGGAGATCAGGCACAGTCAATGAATGGAAATGGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGACTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGAACCATTGTTGACAATTTCGTGACGCAGTTTAATGATATCTTCAGGCTGAAAGCTATTGCAGCAAAAGCTGATTCTTGCCAGATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGCCATCCGAACTCTTCAAGCTTCTTCTAAGTCAGTTGGAGCCTTTAGTCGAGCAACAGATGGATATCTACAGCTTTCAGCAATCATGCCAGCAGGCTGAAGAAGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCAGTATCTGAGACATTGGCTAATGGTTCGCCCAGCTCATCAGGCTCCCCGGGAAATGTGGCAAATAACATGGGTCAAATAACTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCTCCAGGCTGACAATCTGCGGCAGCGGACATTAGAAGTAATGCTTCAAATATTAACGACCAGGCAATCGGCTCGTGCTCTTCTTGCCATCAGTGATTATTTCTCACGGCTGAGAGAGCTGGGTTCTTTGTGGCCTTCCAGGCCAAGGGAGTGA >Glyma03g28400.4 sequence type=transcript gene model=Glyma03g28400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CAATTCTATAAAAGATAAAATGCATTATTATTTTTATTGACCAATCAAAAGGTTAAATGCAGTAATTGTGTTCAAATGGCATAAGCAAGCCTTTTGTTACTATGCATTAATTTTTCTTTTTTTATTTTTCATTCAGACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAATGGCATATGTGCAACAACTAGAGAGCAGTAGGTTGAAACTGATATCGCCAGCAGGGAATATTTATTTCAAGTACTGGAGATCAGGCACAGTCAATGAATGGAAATGGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGACTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGAACCATTGTTGACAATTTCGTGACGCAGTTTAATGATATCTTCAGGCTGAAAGCTATTGCAGCAAAAGCTGATTCTTGCCAGATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGCCATCCGAACTCTTCAAGCTTCTTCTAAGTCAGTTGGAGCCTTTAGTCGAGCAACAGATGGATATCTACAGCTTTCAGCAATCATGCCAGCAGGCTGAAGAAGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCAGTATCTGAGACATTGGCTAATGGTTCGCCCAGCTCATCAGGCTCCCCGGGAAATGTGGCAAATAACATGGGTCAAATAACTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCTCCAGGCTGACAATCTGCGGCAGCGGACATTAGAAGTAATGCTTCAAATATTAACGACCAGGCAATCGGCTCGTGCTCTTCTTGCCATCAGTGATTATTTCTCACGGCTGAGAGAGCTGGGTTCTTTGTGGCCTTCCAGGCCAAGGGAGTGAAGCATTTCACAGCCCCATTAGTGGACTTCTTTCATGTCTGACTCCCTTAAACACCGATGATTATTGAATCTTGTGCTCTGAATGAGTTCAATGGAAGCTGGTGTCTTTGGACAATGAATTCCTCTTGAAGCCTAGTTGTGATGCTATAAGCATTAAATGCTATGACTTTTCTACTCTGCTGATGTGGTGCAACATTTTTCTTTAAGCTTTTGTGGTTTTAAAATAGTTTCAATAATTTGATTATATAGGTGTATGATAGATAGAAGTTGTTGATGTGACACCCTCTACTGCGAGATATACATAAATAAATAAAATATATTGGT >Glyma03g28400.5 sequence type=transcript gene model=Glyma03g28400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTCAATATGTCATATTATTGAGACCCAACAACTTGTCATGTTTTATAAATATTTCTGAACTTCTTTTTTAAATCCTTGTTTCTATTTATTCAGGCATATGTGCAACAACTAGAGAGCAGTAGGTTGAAACTGATATCGCCAGCAGGGAATATTTATTTCAAGTACTGGAGATCAGGCACAGTCAATGAATGGAAATGGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGACTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGAACCATTGTTGACAATTTCGTGACGCAGTTTAATGATATCTTCAGGCTGAAAGCTATTGCAGCAAAAGCTGATTCTTGCCAGATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGCCATCCGAACTCTTCAAGCTTCTTCTAAGTCAGTTGGAGCCTTTAGTCGAGCAACAGATGGATATCTACAGCTTTCAGCAATCATGCCAGCAGGCTGAAGAAGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCAGTATCTGAGACATTGGCTAATGGTTCGCCCAGCTCATCAGGCTCCCCGGGAAATGTGGCAAATAACATGGGTCAAATAACTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCTCCAGGCTGACAATCTGCGGCAGCGGACATTAGAAGTAATGCTTCAAATATTAACGACCAGGCAATCGGCTCGTGCTCTTCTTGCCATCAGTGATTATTTCTCACGGCTGAGAGAGCTGGGTTCTTTGTGGCCTTCCAGGCCAAGGGAGTGAAGCATTTCACAGCCCCATTAGTGGACTTCTTTCATGTCTGACTCCCTTAAACACCGATGATTATTGAATCTTGTGCTCTGAATGAGTTCAATGGAAGCTGGTGTCTTTGGACAATGAATTCCTCTTGAAGCCTAGTTGTGATGCTATAAGCATTAAATGCTATGACTTTTCTACTCTGCTGATGTGGTGCAACATTTTTCTTTAAGCTTTTGTGGTTTTAAAATAGTTTCAATAATTTGATTATATAGGTGTATGATAGATAGAAGTTGTTGATGTGACACCCTCTACTGCGAGATATACATAAATAAATAAAATATATTGGT
>Glyma03g28400.2 sequence type=CDS gene model=Glyma03g28400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGGAAATGGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGACTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGAACCATTGTTGACAATTTCGTGACGCAGTTTAATGATATCTTCAGGCTGAAAGCTATTGCAGCAAAAGCTGATTCTTGCCAGATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGCCATCCGAACTCTTCAAGCTTCTTCTAAGTCAGTTGGAGCCTTTAGTCGAGCAACAGATGGATATCTACAGCTTTCAGCAATCATGCCAGCAGGCTGAAGAAGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCAGTATCTGAGACATTGGCTAATGGTTCGCCCAGCTCATCAGGCTCCCCGGGAAATGTGGCAAATAACATGGGTCAAATAACTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCTCCAGGTACGCTCATTTTCCGGTCTAATTCTGTTTTCTCAACTTCCATCTTTTTGA >Glyma03g28400.3 sequence type=CDS gene model=Glyma03g28400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTAGTGCAGAAACTTTAAAGGGACGGGTTCAGCATACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAATGGCATATGTGCAACAACTAGAGAGCAGTAGGTTGAAACTGATATCGCCAGCAGGTTTGGGAATATTTATTTCAAGTACTGGAGATCAGGCACAGTCAATGAATGGAAATGGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGACTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGAACCATTGTTGACAATTTCGTGACGCAGTTTAATGATATCTTCAGGCTGAAAGCTATTGCAGCAAAAGCTGATTCTTGCCAGATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGCCATCCGAACTCTTCAAGCTTCTTCTAAGTCAGTTGGAGCCTTTAGTCGAGCAACAGATGGATATCTACAGCTTTCAGCAATCATGCCAGCAGGCTGAAGAAGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCAGTATCTGAGACATTGGCTAATGGTTCGCCCAGCTCATCAGGCTCCCCGGGAAATGTGGCAAATAACATGGGTCAAATAACTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCTCCAGGCTGACAATCTGCGGCAGCGGACATTAGAAGTAATGCTTCAAATATTAACGACCAGGCAATCGGCTCGTGCTCTTCTTGCCATCAGTGATTATTTCTCACGGCTGAGAGAGCTGGGTTCTTTGTGGCCTTCCAGGCCAAGGGAGTGA >Glyma03g28400.4 sequence type=CDS gene model=Glyma03g28400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGGAAATGGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGACTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGAACCATTGTTGACAATTTCGTGACGCAGTTTAATGATATCTTCAGGCTGAAAGCTATTGCAGCAAAAGCTGATTCTTGCCAGATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGCCATCCGAACTCTTCAAGCTTCTTCTAAGTCAGTTGGAGCCTTTAGTCGAGCAACAGATGGATATCTACAGCTTTCAGCAATCATGCCAGCAGGCTGAAGAAGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCAGTATCTGAGACATTGGCTAATGGTTCGCCCAGCTCATCAGGCTCCCCGGGAAATGTGGCAAATAACATGGGTCAAATAACTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCTCCAGGCTGACAATCTGCGGCAGCGGACATTAGAAGTAATGCTTCAAATATTAACGACCAGGCAATCGGCTCGTGCTCTTCTTGCCATCAGTGATTATTTCTCACGGCTGAGAGAGCTGGGTTCTTTGTGGCCTTCCAGGCCAAGGGAGTGA >Glyma03g28400.5 sequence type=CDS gene model=Glyma03g28400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGGAAATGGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGACTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGAACCATTGTTGACAATTTCGTGACGCAGTTTAATGATATCTTCAGGCTGAAAGCTATTGCAGCAAAAGCTGATTCTTGCCAGATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGCCATCCGAACTCTTCAAGCTTCTTCTAAGTCAGTTGGAGCCTTTAGTCGAGCAACAGATGGATATCTACAGCTTTCAGCAATCATGCCAGCAGGCTGAAGAAGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCAGTATCTGAGACATTGGCTAATGGTTCGCCCAGCTCATCAGGCTCCCCGGGAAATGTGGCAAATAACATGGGTCAAATAACTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCTCCAGGCTGACAATCTGCGGCAGCGGACATTAGAAGTAATGCTTCAAATATTAACGACCAGGCAATCGGCTCGTGCTCTTCTTGCCATCAGTGATTATTTCTCACGGCTGAGAGAGCTGGGTTCTTTGTGGCCTTCCAGGCCAAGGGAGTGA
>Glyma03g28400.2 sequence type=predicted peptide gene model=Glyma03g28400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNGNGAMAFDVEYARWLEEHNRQTNELRTAINSHAGDIELRTIVDNFVTQFNDIFRLKAIAAKADSCQILSGMWKTPAERCFMWIGGFRPSELFKLLLSQLEPLVEQQMDIYSFQQSCQQAEEALSQGMDALQQSVSETLANGSPSSSGSPGNVANNMGQITMAMGKLGTLEGFLLQVRSFSGLILFSQLPSF* >Glyma03g28400.3 sequence type=predicted peptide gene model=Glyma03g28400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSAETLKGRVQHTLRRLAQNREAARKSRLRKMAYVQQLESSRLKLISPAGLGIFISSTGDQAQSMNGNGAMAFDVEYARWLEEHNRQTNELRTAINSHAGDIELRTIVDNFVTQFNDIFRLKAIAAKADSCQILSGMWKTPAERCFMWIGGFRPSELFKLLLSQLEPLVEQQMDIYSFQQSCQQAEEALSQGMDALQQSVSETLANGSPSSSGSPGNVANNMGQITMAMGKLGTLEGFLLQADNLRQRTLEVMLQILTTRQSARALLAISDYFSRLRELGSLWPSRPRE* >Glyma03g28400.4 sequence type=predicted peptide gene model=Glyma03g28400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNGNGAMAFDVEYARWLEEHNRQTNELRTAINSHAGDIELRTIVDNFVTQFNDIFRLKAIAAKADSCQILSGMWKTPAERCFMWIGGFRPSELFKLLLSQLEPLVEQQMDIYSFQQSCQQAEEALSQGMDALQQSVSETLANGSPSSSGSPGNVANNMGQITMAMGKLGTLEGFLLQADNLRQRTLEVMLQILTTRQSARALLAISDYFSRLRELGSLWPSRPRE* >Glyma03g28400.5 sequence type=predicted peptide gene model=Glyma03g28400 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNGNGAMAFDVEYARWLEEHNRQTNELRTAINSHAGDIELRTIVDNFVTQFNDIFRLKAIAAKADSCQILSGMWKTPAERCFMWIGGFRPSELFKLLLSQLEPLVEQQMDIYSFQQSCQQAEEALSQGMDALQQSVSETLANGSPSSSGSPGNVANNMGQITMAMGKLGTLEGFLLQADNLRQRTLEVMLQILTTRQSARALLAISDYFSRLRELGSLWPSRPRE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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