Glyma03g28370 - SoyBase

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Report for Sequence Feature Glyma03g28370

Feature Type:	gene_model
Chromosome:	Gm03
Start:	36260699
stop:	36266680
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g28370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G41190	AT	Annotation by Michelle Graham. TAIR10: Transmembrane amino acid transporter family protein \| chr2:17167561-17170145 REVERSE LENGTH=536	SoyBase	E_val: 1.00E-140	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG1303	KOG	Amino acid transporters	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PTHR22950:SF9	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_G7KQT0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Defensin n=1 Tax=Medicago truncatula RepID=G7KQT0_MEDTR	SoyBase	E_val: 2.00E-170	ISS
UniRef100_UPI00023379A6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023379A6 related cluster n=1 Tax=unknown RepID=UPI00023379A6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g28370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28370

Paralog	Evidence	Comments
Glyma19g31090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma03g28370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g28370

Limit To All Plant Sequences

>Glyma03g28370.2   sequence type=CDS   gene model=Glyma03g28370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAGAATGAGAACAAGGAAAAAATTATGATTTTTCCATGGATCAACGAAGAAGAACAGGACATAGAAGCTATCGGGTACCACAGTGATAATGATAGTGATCAGTGTGGCAGAGATAGTGAGGGGAATCGTAGAACAGAACCTCTTTCTTCCTCTTCTCAGATATGGCCTCAAACTTACGGAGAAGCCACTGATTCTTATTCAATTTCTGCTGCTCCAAATCTTGAATCAATTATACGAGCACCGAGTGTTATTTATTCAAGCTTTATCGGTGGTGGTGGTTTTGGTTCAAAGAGTTACTTAGAACACGATGAAAGGACTTCTTTTCTATCTGGCGAGGAACTCACTAATCGAGGGATCTCAAGAAGACAATCAACATGGTGGGAGAAAGCTTCAATTCAAATGCAAATTCCTGAAGAATTACCTGTTGTTTATGGATGTAGCCTCTCTCAAACAATATTCAATGGTATGGGGATTAATGTGATGGCCCAAGTTGGCCTTCTATCTACACCTTATACAGTGAAACAAGCTGGGTGGGCGGGTTTGTTTGTGATGCTTTTTTTCGCACTTGTATGTTGTTATACAGCAGACCTTATGAGACACTGCTTTGAAAGCAGAGAAGGGATCATTAGCTACCCAGATATAGGACAAGCTGCATTTGGAAGATATGACCGACTTATTGTATCATCATATTGTGTGGAGTTTATCATCTTGGAAGGAGATAACCTCACCAGGCTGTTTCCTGGAACATCCTTACACTGGGGAAGTTTCCAGTTAGACTCCAAACACTTGTTTGGAATTTTAACAGCACTTGTCATTCTCCCAACAGTTTGGTTGAGGGATCTTCGCATAATCTCGTATCTCTCAGCTGGAGGGGTTATTTCTACAGCATTGATTACTATGTGTGTGTTTTTGGTTGGGACATCTGATTCTGTTGGATTCCATCTCACTGGTCCATTGGTGAAATGGAGCGGCATGCCCTTTGCTTTTGGTATATACGATTTTATTTTATGCATATTCATGGGATATCTCATGTTTGGTGAAGGGACATTGTCTCAGATAACATTGAATCTACCACCAAATGCATTTGCTTCCAAAGTTGCCTTGAGTGTTGAGGAGTTGCTGCCAGATAGCATTTCGAGTACTTACTGGTGTTTCATTACTCTTAGAACAGTACTGGTTATATCTACGGTTGGTGCTGCTTTTCTGATTCCATTTTTTAATGTACTAGTGGCAGTGGTAATGCCAGCTTTATGTTTTCTGAAAATTGTGGGGGGAAAAGCAACAACTACACAGGTATGA

Predicted protein sequences of Glyma03g28370

Limit To All Plant Sequences

>Glyma03g28370.2   sequence type=predicted peptide   gene model=Glyma03g28370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKNENKEKIMIFPWINEEEQDIEAIGYHSDNDSDQCGRDSEGNRRTEPLSSSSQIWPQTYGEATDSYSISAAPNLESIIRAPSVIYSSFIGGGGFGSKSYLEHDERTSFLSGEELTNRGISRRQSTWWEKASIQMQIPEELPVVYGCSLSQTIFNGMGINVMAQVGLLSTPYTVKQAGWAGLFVMLFFALVCCYTADLMRHCFESREGIISYPDIGQAAFGRYDRLIVSSYCVEFIILEGDNLTRLFPGTSLHWGSFQLDSKHLFGILTALVILPTVWLRDLRIISYLSAGGVISTALITMCVFLVGTSDSVGFHLTGPLVKWSGMPFAFGIYDFILCIFMGYLMFGEGTLSQITLNLPPNAFASKVALSVEELLPDSISSTYWCFITLRTVLVISTVGAAFLIPFFNVLVAVVMPALCFLKIVGGKATTTQV*

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