SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G43250 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17977619-17979496 FORWARD LENGTH=625 | SoyBase | E_val: 0 | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| UniRef100_Q01IU8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0130B08.2 protein n=3 Tax=Oryza sativa RepID=Q01IU8_ORYSA | SoyBase | E_val: 3.00E-155 | ISS |
| UniRef100_UPI00023379A4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023379A4 related cluster n=1 Tax=unknown RepID=UPI00023379A4 | SoyBase | E_val: 0 | ISS |
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Glyma03g28341 not represented in the dataset |
Glyma03g28341 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g31060 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g127700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g28341.1 sequence type=CDS gene model=Glyma03g28341 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGGTTGCGGAATCTGCTAAACGTGTGGCCATTCAGAGTGGACGAGCTGAGAGATTCGAAACAACTGGTGAAGAAACTGAGCGTCCCCGAAGACACGAAGCAATTCGTGTTCGCGGTGCGCGATCCCCAAACCCAAACCCTAATTTACATCCTCTCCGTCCTCAACTTATCGGAGCGATCAGCCTCCGACGCCACGTGTCTCATCAGGGAGATCAAACCCGACGCCGTTTTGGTGCAAGCCGCCGCCGCCGCTGCCGCCGCTGTTTCCCCCTTCTCTCAGCTTCAGTCCGAAGAAGAAGAACAACAACACTTCGTTCCGTTACCGACCTCATCTTTCGGGGTACTCAAACGTTGCCTTGTTGATACAATTGGTACGGACAAGTACGAGACTGTTGCAGGGAACTTCGTGCTGAGGGAGATTTTCGGGACCAGTTTTCATGGTCCCTTGTTGGCGGCTAAGAGGGCTGCTGAGGATGTTGGATCGTCGTTTTTTGTTATAGAGTCTCCCTCTCCCTCTCCCTCTTGTTGGGGCAATAATAGTAATAATAATAGTGATAGTGATTGCAATAATGGTGGTGGAGTTGTTGACAGTGGTAGCCATTTTCGAAGTCTTGTTAATTGTTTGGTTCCTCAGCAGCATGCTGCTTCTTGGGCTCCTTCGGCTTTGAAAAGGTTTTCTCTTGATAAGGAACTTAGGATGATGTTGGCTAAGGCTTTGTCGTGGAATTCGGGTCCACTTTTGCTTAGTAGTTCTGTTTTGGAGAGGGGTAGTATTGAGGAAATTCGGCCTTCAAGTAGTTACGAGACCCCGGGTTTTGCCAGGTCTATTTATCCTTTGCTTGAGGATTTGTATAGTATATTTGGTGATCTTCCGTCACTCGGGAAGGCACTGGCACATGTGCAGAAGATGTTGTTGGATGTGAATAGAGGGGAGGTTCTTGATAAAAGTACCGTTTCTGAGGTCTATACTTTCCGGATTGCTGTTGAGGGGCTTAGAATTGCTCTGAATAATAAGGGGTTGAGGCCTGTTAACGGGAAAGGTGCTGCAAAGTCGGATAAGATTGAGTTCTCGGATCTTCCCATTGATGACAAGTCACACGCGCTCTTCGCACAGGCTATCCGGAGCCAGGCTGTTAAGTTTAAGACCATTGTGGTGGTGGTTGACGCTAGTGCCTTGGCTGGTCTTAGGAAACATTGGGATACTCCTCTCCCTGTTGAAGTCAAAGAGCTGATTGGAGAACTAATCACAAATTCTGAAGGTAAAGGGGTTATGTTGAATCATAATGAGAAGAAGCGGCTATTAACAGATAAATCTATGGTGGCAGTAGGTGCCGGAGCAACAGCAGTTTTGGGAGCTTCATCGCTGACCAAAGTAGTCCCTGCGTCAACACTGGTGAAGGTTGTCACTTTCAAAATTCCAACTTCACTCAAAATCGGTCTCAGCCAGATGCAGAAAGTGCTGGCTTTTGCCTTTGGCCCTTCTAAAGTTGTGGCTCCAGGGATTGCAACTTCAGGAGCAAAAACGTCTGGCATCATGAAGGCAGCAGTATCTACCGAAAAGATTCGAGGAGTTGCTCACAGTGTTATAGCCTCTGCCCAAAAAAACAGTATTTCAGTCATGAGAACAGCTTTCTATGAAATAATGAGGAAGCGAAAGGTGCAGCATGTTGGGTTCTTGCCTTGGGCTACATTTGCCGGCAGTATTGGAACTTGTTCAGGCTTGCTTTTTTATGGTGATGGGATTGAGTGTGCTGTTGAGTCTCTCCCTGCAGCCCCCTCCATTGCCAGTTTGGGTCGTGGGATTCAGCATCTACGTGAGGCATCTCAAGCAGTGATGCAAACAGAAGGAAGTAGAATCCAAGCATCAATAGAATCTCTAATAAAAAGAATAAAGAAGGCAAGGGATTGA
>Glyma03g28341.1 sequence type=predicted peptide gene model=Glyma03g28341 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MWLRNLLNVWPFRVDELRDSKQLVKKLSVPEDTKQFVFAVRDPQTQTLIYILSVLNLSERSASDATCLIREIKPDAVLVQAAAAAAAAVSPFSQLQSEEEEQQHFVPLPTSSFGVLKRCLVDTIGTDKYETVAGNFVLREIFGTSFHGPLLAAKRAAEDVGSSFFVIESPSPSPSCWGNNSNNNSDSDCNNGGGVVDSGSHFRSLVNCLVPQQHAASWAPSALKRFSLDKELRMMLAKALSWNSGPLLLSSSVLERGSIEEIRPSSSYETPGFARSIYPLLEDLYSIFGDLPSLGKALAHVQKMLLDVNRGEVLDKSTVSEVYTFRIAVEGLRIALNNKGLRPVNGKGAAKSDKIEFSDLPIDDKSHALFAQAIRSQAVKFKTIVVVVDASALAGLRKHWDTPLPVEVKELIGELITNSEGKGVMLNHNEKKRLLTDKSMVAVGAGATAVLGASSLTKVVPASTLVKVVTFKIPTSLKIGLSQMQKVLAFAFGPSKVVAPGIATSGAKTSGIMKAAVSTEKIRGVAHSVIASAQKNSISVMRTAFYEIMRKRKVQHVGFLPWATFAGSIGTCSGLLFYGDGIECAVESLPAAPSIASLGRGIQHLREASQAVMQTEGSRIQASIESLIKRIKKARD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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