Glyma03g28320 - SoyBase

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Report for Sequence Feature Glyma03g28320

Feature Type:	gene_model
Chromosome:	Gm03
Start:	36202834
stop:	36209345
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g28320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G12250	AT	Annotation by Michelle Graham. TAIR10: TGACG motif-binding factor 6 \| chr3:3906351-3908583 FORWARD LENGTH=330	SoyBase	E_val: 4.00E-166	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0009617	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to bacterium	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009862	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR22952	Panther	CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED	JGI		ISS
PTHR22952:SF52	Panther	OS01G0279900 PROTEIN	JGI		ISS
PF00170	PFAM	bZIP transcription factor	JGI		ISS
UniRef100_I1JN50	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JN50_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0GPG7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP96 n=1 Tax=Glycine max RepID=Q0GPG7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g28320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28320

Paralog	Evidence	Comments
Glyma19g31050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g127600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g28320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g28320

Limit To All Plant Sequences

>Glyma03g28320.2   sequence type=transcript   gene model=Glyma03g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTCTTTGAGTGTGTGGTGTGTGTGGTAATAAAACCATATAAATTGTTTTCAATCATAAGCAACAATAACCGAATAAATAATTAAAAAAACCAAACAAAAAAAAAGCTTATAAAATTTCCCCAGGGTTAGAGATGAAATTGTACTGTGTAACATCACTATATTATTATAATAAAATATTAAAGTGCCATTTCCCTTCAATCAAAAAAGTCAAAAAGTCTTGGTATTTATCGTCAACTTGCCACTGGTTAGGGTTTGCAGGGCCATTATTCTATCGGTTTCTTCTTCTGGGTGTTGCTTGAATCCGTGGAAAGTTCATTTATTTTCGATTTTCATGCGACCAGGGACTTTTGGGGCTAATAAAGTTTCTGAAGAGATAAGATGATCGTTGTGCTGAGCATGGTTATTGATGGGTAGCAGAAGTAGAACAGTAAACGTTAACACTAAGGACACTGACAAGGTTCTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCCAATTCCATGGCCATGGAAGCAACTAATGCTCATCCTTCCCGTATTTCTGAATTTGGAACCCTGGAGCAATCTCTTGGATTTCGTGTTGAAGATACCATTAATCTTAGCAGAAATCCGATGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGTGCTTTAAATAAGGCACTGGTATTCCAAAAAGATTCGCAACCAACTCTGGCTTCGACATCTGCTGGTCGTGAGAACTGGGGAGAGACCAACATGGCTGATGCTAGCCCTAGGACTGATACTTCAACAGATGATACAGAAGACAAAAATCAAAGGCCTGAAAGGGATGAATCCAGTGGATCAAAAGATAAATCAGATCAAAAGACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGATCTCGCCAGCAGGGAATATTTATTTCAAGTACTGGAGATCAGGCACAGTCAATGAGTGGAAATGGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGAACCATTGTTGACAATTTCATGACGCAGTTTGATGATATCTTCAGACTGAAAGGTATTGCAGCAAAAGCTGATGTTTTCCACATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAACTCCTCAAGCTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATCTACAACTTGCAGCAATCATCCCAGCAGACTGAAGATGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCACTATCTGAGACATTGGCTAATGGTTCGCCCAGCTCATCAGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACGACCAGGCAATCGGCTCGTGCTCTTCTTGCCATCAGTGATTATTTCTCACGGCTGAGAGCGCTGAGTTCTTTGTGGCTTGCCAGGCCAAGGGAGTGAAGCATTTCACAGCCCCATTAGTGGACTTCTTTCATGCCTGACTCCCTTAAACACCGATGATCATTGAATCTTGTGCTCTGAATGAGTTCAATGGAAGCTGGTGTCTTTTGACAATGAATTCCTCTTGAAGCCTAGTTGTGATGCTATAAACATTAAATGCTATGATTTTTCTACTCTGCCAACTGCTGGTGTGGTGCAACATTTTTCTTTAAGCTTTTGTGGTTTTAAAATAGTCTCAATAATTTGATTATATAGGTGTATGATAGATAGAAGCTGTTGAAGGGAAAAATGTAGAAATAGTGTATCTGTATTTTTAGGTTATAGCTGTTCATTGTATTTCAGAAATCAGCTTTTATTTGAGGGGGTATTTACCTCTCTTTAGTTTCATTTCCTGCTTAATGGTTTGTGGTTGGTTGCACATAAGGCTCCATGGTGTATGTATTTATACGTTCTCTTTTGGTATATTAGAAAGACATTACTAACTAAACTGAACTTGTTTCGTGGTGTGTGTTTTATAAG

Coding sequences of Glyma03g28320

Limit To All Plant Sequences

>Glyma03g28320.1   sequence type=CDS   gene model=Glyma03g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAGCAGAAGTAGAACAGTAAACGTTAACACTAAGGACACTGACAAGGTTCTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCCAATTCCATGGCCATGGAAGCAACTAATGCTCATCCTTCCCGTATTTCTGAATTTGGAACCCTGGAGCAATCTCTTGGATTTCGTGTTGAAGATACCATTAATCTTAGCAGAAATCCGATGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGTGCTTTAAATAAGTCAATTGCAACATCGGATATAAACCTCTCTGCTGCTATTGCTGCATCTCAGGCACTGGTATTCCAAAAAGATTCGCAACCAACTCTGGCTTCGACATCTGCTGGTCGTGAGAACTGGGGAGAGACCAACATGGCTGATGCTAGCCCTAGGACTGATACTTCAACAGATGATACAGAAGACAAAAATCAAAGGCCTGAAAGGGATGAATCCAGTGGATCAAAAGATAAATCAGATCAAAAGACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGATCTCGCCAGCAGGGAATATTTATTTCAAGTACTGGAGATCAGGCACAGTCAATGAGTGGAAATGGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGAACCATTGTTGACAATTTCATGACGCAGTTTGATGATATCTTCAGACTGAAAGGTATTGCAGCAAAAGCTGATGTTTTCCACATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAACTCCTCAAGCTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATCTACAACTTGCAGCAATCATCCCAGCAGACTGAAGATGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCACTATCTGAGACATTGGCTAATGGTTCGCCCAGCTCATCAGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACGACCAGGCAATCGGCTCGTGCTCTTCTTGCCATCAGTGATTATTTCTCACGGCTGAGAGCGCTGAGTTCTTTGTGGCTTGCCAGGCCAAGGGAGTGA

>Glyma03g28320.2   sequence type=CDS   gene model=Glyma03g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTAGCAGAAGTAGAACAGTAAACGTTAACACTAAGGACACTGACAAGGTTCTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCCAATTCCATGGCCATGGAAGCAACTAATGCTCATCCTTCCCGTATTTCTGAATTTGGAACCCTGGAGCAATCTCTTGGATTTCGTGTTGAAGATACCATTAATCTTAGCAGAAATCCGATGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGTGCTTTAAATAAGGCACTGGTATTCCAAAAAGATTCGCAACCAACTCTGGCTTCGACATCTGCTGGTCGTGAGAACTGGGGAGAGACCAACATGGCTGATGCTAGCCCTAGGACTGATACTTCAACAGATGATACAGAAGACAAAAATCAAAGGCCTGAAAGGGATGAATCCAGTGGATCAAAAGATAAATCAGATCAAAAGACATTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGATCTCGCCAGCAGGGAATATTTATTTCAAGTACTGGAGATCAGGCACAGTCAATGAGTGGAAATGGCGCTATGGCATTTGATGTAGAGTACGCACGATGGTTAGAAGAGCATAATAGACAAACCAATGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTTCGAACCATTGTTGACAATTTCATGACGCAGTTTGATGATATCTTCAGACTGAAAGGTATTGCAGCAAAAGCTGATGTTTTCCACATTCTGTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGGTCATCCGAACTCCTCAAGCTTCTTCTAAGTCAGTTGGAGCCTTTAGCCGAGCAACAATTGATGGGCATCTACAACTTGCAGCAATCATCCCAGCAGACTGAAGATGCTCTTTCCCAAGGGATGGATGCATTGCAGCAATCACTATCTGAGACATTGGCTAATGGTTCGCCCAGCTCATCAGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGTACACTTGAGGGGTTTCTTCACCAGGCTGACAATCTGCGGCAGCAGACATTACAACAAATGCTTCGAATATTAACGACCAGGCAATCGGCTCGTGCTCTTCTTGCCATCAGTGATTATTTCTCACGGCTGAGAGCGCTGAGTTCTTTGTGGCTTGCCAGGCCAAGGGAGTGA

Predicted protein sequences of Glyma03g28320

Limit To All Plant Sequences

>Glyma03g28320.1   sequence type=predicted peptide   gene model=Glyma03g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSRSRTVNVNTKDTDKVLNGMPSYAPPLPSSSNSMAMEATNAHPSRISEFGTLEQSLGFRVEDTINLSRNPMFNQMKSNSQALGADIQFGALNKSIATSDINLSAAIAASQALVFQKDSQPTLASTSAGRENWGETNMADASPRTDTSTDDTEDKNQRPERDESSGSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRSRQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLLSQLEPLAEQQLMGIYNLQQSSQQTEDALSQGMDALQQSLSETLANGSPSSSGSSGNVANYMGQMAMAMGKLGTLEGFLHQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE*

>Glyma03g28320.2   sequence type=predicted peptide   gene model=Glyma03g28320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSRSRTVNVNTKDTDKVLNGMPSYAPPLPSSSNSMAMEATNAHPSRISEFGTLEQSLGFRVEDTINLSRNPMFNQMKSNSQALGADIQFGALNKALVFQKDSQPTLASTSAGRENWGETNMADASPRTDTSTDDTEDKNQRPERDESSGSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRSRQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLLSQLEPLAEQQLMGIYNLQQSSQQTEDALSQGMDALQQSLSETLANGSPSSSGSSGNVANYMGQMAMAMGKLGTLEGFLHQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE*

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