SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G45940 | AT | Annotation by Michelle Graham. TAIR10: Glycosyl hydrolases family 31 protein | chr3:16886226-16889171 REVERSE LENGTH=868 | SoyBase | E_val: 3.00E-22 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| PTHR22762 | Panther | ALPHA-GLUCOSIDASE | JGI | ISS | |
| PTHR22762:SF5 | Panther | ALPHA-XYLOSIDASE | JGI | ISS | |
| PF01055 | PFAM | Glycosyl hydrolases family 31 | JGI | ISS | |
| UniRef100_G7KQR9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Alpha-glucosidase yihQ n=1 Tax=Medicago truncatula RepID=G7KQR9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339D52 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339D52 related cluster n=1 Tax=unknown RepID=UPI0002339D52 | SoyBase | E_val: 0 | ISS |
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Glyma03g28281 not represented in the dataset |
Glyma03g28281 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g127200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g28281.1 sequence type=CDS gene model=Glyma03g28281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAATCCTTAAGATAACCAAAAAACACCACAAGCGTTTCAACAACCCTTTCCCTTCTTCAGTTTCAACCACCATCCCCTATGTCCAAGGCTCTCTCTTCTTCAATTCCAAAAGAGTTCCTTCGGATCAAACCTTCTCAATTGGCACTGATTTTCATCTTTCTTGGACCTCCAACAATGGAGGACACCTCTCAATTTCTCATCTTTCTCATCAAACCAGACCCATTTGGTCAACGATTCCAGGACAGGCTTTTGTCTCAGCTGCACTTGTTGACACAGAAGTTGAAGAAAGTAGAGGATCCTTTCTTGTCAAAGACAAAGATGTCCATTTGGTTTGCAATCACCAAACCATTGAGGATATTAGGGTGATTGAGGATATTAGTCAATTTGATCATCATTTGGAATGTGAAGTTGCAGATTCTCCTTGTGTGTCACAAGGGTTGGAAAAGAAAAGTGATGCACAAGAGATTCATCTTCCTACTTTGATGATCACTGGAAGGCTTTTCAATATGTCTAAGAAGAGTAAAAGGTTTCAAAAGCATGGCATTCAAGCAACTATGCAGTTTGAAGCAAAAGGGCCCTCTGTGTATGCAAGGTATTGGGTTTTGTTCAATCAGAAAGGCAACCATGAGGTTGGGTTTCAAGTGAAGATTGAGAAACCGAACTTCGTCTCACGCAACCAAGTTTCCAAAAAGGCTTCAGGAGTGTACCAGGGCTTTAAGAGGAGGCTAAGTAATAGGAAAAAGAGACTAGATTGGTGTTGGTACCTTTCAAGGCCAAGAGGGTTTGTGCTAGTTTCTTCAGTGGAGGAAGAGATAGGAAACTTGGATATTCCAAAACCAGAAGAGTTCAATAGAGTGTGGTTGACATATGCAAGTGATGAGAATGAGAGGTTTTACGGTTTTGGTGAGCAGTTTTCTCACATGAATTTCAAGGGCAAAAGGGTGCCAATCTTTGTTCAAGAACAAGGTATTGGCAGAGGAGATCAACCTATTACCTTGGCTGCTAACTTAATCAGTTACAGGGCAGGAGGTGATTGGAGTACAACTTATGCTCCTTCTCCATTCTACATAACATCAAAAATGAGGTCTGTCTGCCTTGAAGGGTATGATTATACTGTCTTCGATCTTACTAGACTTGACAGAGTACAGATACAGATACATGGAAATTCAGTTGAAGGGCGGATATTGCATGGGAACTCACCTTGTGAACTGATTGAACGTTCCACAGAAAGCATTGGAAGGCTACCTGAGCTTCCAGAGTGGATAATATCAGGTGCTATAGTTGGAATGCAGGGTGGCACAGATGCTGTACGTCACATTTGGGATGAACTAAGGACTTATGACGTTCCTGTCTCAGCATTTTGGTTGCAGGATTGGGTAGGGCAGAGAGAAACATTGATTGGTTCACAGCTCTGGTGGAATTGGGAAGTGGATGCACAAAGGTATTGGGGATGGAAGGAACTTATCAAAGATCTTAGCTCTCAGAATATAAAGGTTATGACGTATTGCAATCCTTGTCTAGCTCTGGTTGATAAGAAACAAAACAAAAGGAGAAACCTCTTTGAGGAGGCAAAAAAGTTGGACATATTGGTGAAAGACAGCAATGGAAATCCATACATGGTTCCAAACACAGCTTTTGATGTTGGAATGCTAGATCTAACGCACCCAAAAACTGCAACTTGGTTCAAGCAGATTCTACGAGAAATGGTGGACGATGGAGTTAGAGGATGGATGGCTGATTTTGGTGAAGGCCTTCCTGTTGATGCTGTTCTATATTCAGGTGAAGATCCTATTTCAGCTCATAACAGATACCCAGAACTATGGGCCAAAATTAACAGAGAGCTTGTGGAAGAATGGAAAAGTAGCTCCCTGGACAAGGTGAAGGAAGATGAAGACGAGGGCTTGGTTTTCTTCATGAGGGCTGGTTTTAGAGATAGCCCTAAGTGGGGGATGCTATTTTGGGAAGGAGACCAAATGGTCAGTTGGCAAACAAATGATGGAATAAAGAGTTCTGTTGTTGGCCTACTCAGCAGTGGAATTTCTGGCTATGCCTTTAATCACAGTGACATTGGAGGATACTGTACAGTAAACTTACCTATAGTTAAATATAGAAGAAGTGAAGAATTGCTTTTGCGGTGGATGGAGCTAAATTCTTTTACCACAGTCTTCCGCACCCATGAAGGAAACAAGCCATCATGCAACAGCCAGTTTTACTCAAACCACCAAACAATGTCACACTTTGCGCGTTCTGCAAAAGTATACAAAGCATGGAAATTTTACCGAATTCAACTGGTGAAGGAAGCTGCACAGAAAGGATTGCCCATATGTCGCCACCTATTTCTCCATTATCCTGATGATGAATGTGTGCATCGTTTGAGTTATCAGCAGTTCTTGGTTGGTTCTGAGTTCCTAGTGGTGCCTGTCCTTGACAAAGGAAAGAAAAAAGTTAAAGCTTATTTTCCATTGGGAGAGAGTAGCAGTTGGATCCATATCTGGACAGGAAAAGTGTTTTCCAAACAAGGACGTGAAGAATGGGTAGAAGCTCCAATAGGATACCCTGCTGTATTTGTTAAGGTTGGCTCCCAGGTTGGAGAAACCTTTTTGAATAATCTGAGAAGTTTAGGCATTCTTTAA
>Glyma03g28281.1 sequence type=predicted peptide gene model=Glyma03g28281 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAILKITKKHHKRFNNPFPSSVSTTIPYVQGSLFFNSKRVPSDQTFSIGTDFHLSWTSNNGGHLSISHLSHQTRPIWSTIPGQAFVSAALVDTEVEESRGSFLVKDKDVHLVCNHQTIEDIRVIEDISQFDHHLECEVADSPCVSQGLEKKSDAQEIHLPTLMITGRLFNMSKKSKRFQKHGIQATMQFEAKGPSVYARYWVLFNQKGNHEVGFQVKIEKPNFVSRNQVSKKASGVYQGFKRRLSNRKKRLDWCWYLSRPRGFVLVSSVEEEIGNLDIPKPEEFNRVWLTYASDENERFYGFGEQFSHMNFKGKRVPIFVQEQGIGRGDQPITLAANLISYRAGGDWSTTYAPSPFYITSKMRSVCLEGYDYTVFDLTRLDRVQIQIHGNSVEGRILHGNSPCELIERSTESIGRLPELPEWIISGAIVGMQGGTDAVRHIWDELRTYDVPVSAFWLQDWVGQRETLIGSQLWWNWEVDAQRYWGWKELIKDLSSQNIKVMTYCNPCLALVDKKQNKRRNLFEEAKKLDILVKDSNGNPYMVPNTAFDVGMLDLTHPKTATWFKQILREMVDDGVRGWMADFGEGLPVDAVLYSGEDPISAHNRYPELWAKINRELVEEWKSSSLDKVKEDEDEGLVFFMRAGFRDSPKWGMLFWEGDQMVSWQTNDGIKSSVVGLLSSGISGYAFNHSDIGGYCTVNLPIVKYRRSEELLLRWMELNSFTTVFRTHEGNKPSCNSQFYSNHQTMSHFARSAKVYKAWKFYRIQLVKEAAQKGLPICRHLFLHYPDDECVHRLSYQQFLVGSEFLVVPVLDKGKKKVKAYFPLGESSSWIHIWTGKVFSKQGREEWVEAPIGYPAVFVKVGSQVGETFLNNLRSLGIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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