Glyma03g28180 - SoyBase

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Report for Sequence Feature Glyma03g28180

Feature Type:	gene_model
Chromosome:	Gm03
Start:	36054776
stop:	36059444
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g28180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G18593	AT	Annotation by Michelle Graham. TAIR10: dual specificity protein phosphatase-related \| chr4:10238154-10238698 FORWARD LENGTH=142	SoyBase	E_val: 8.00E-41	ISS
GO:0000188	GO-bp	Annotation by Michelle Graham. GO Biological Process: inactivation of MAPK activity	SoyBase	N/A	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0043405	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of MAP kinase activity	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008138	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine/serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0033549	GO-mf	Annotation by Michelle Graham. GO Molecular Function: MAP kinase phosphatase activity	SoyBase	N/A	ISS
PTHR10159	Panther	DUAL SPECIFICITY PROTEIN PHOSPHATASE	JGI		ISS
PTHR10159:SF129	Panther	MAP KINASE PHOSPHATASE	JGI		ISS
PF00782	PFAM	Dual specificity phosphatase, catalytic domain	JGI		ISS
UniRef100_I1JN39	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JN39_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2HSZ6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dual specificity protein phosphatase n=1 Tax=Medicago truncatula RepID=Q2HSZ6_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g28180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28180

Paralog	Evidence	Comments
Glyma19g30950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g126200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g28180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g28180

Limit To All Plant Sequences

>Glyma03g28180.1   sequence type=CDS   gene model=Glyma03g28180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTTACACGGTCCGAGAGAACCTCTCGATCGGGAACATCGGCGACGCGGCGGAGATTCTCGAAAACGGCGCCGCTCAGAGCGTGACGCACATCCTCTCCGTCCTCAGCTCCGCCTCTATCTCCTTCTTCTCCGAATGGAAAACCACTCTCTCCATCCCCGCCATGGAGATCACCAAAGTCCACGTGGCGGACGCCGCCGCCAAATCGGCTCTCCCGCCGGAGAAGCTCCTCTACTCGCTCGAGTACGCCGGCCGCGACCTCAAGCTCGTGCGCATGGCCGTGCCTCTCAGAGACACCGAGAAAGATGACTTGCTCGATTACTTGGAAGTCTGCATCGATTTCATTGATCGCGGTCGGAAGGAAGGTTCCGTTCTCGTTCACTGTTTCGCCGGAGTTTCCAGAAGCGCGGCGATTATTACGGCGTATTTGATGAGAACCGAACGTCTATCTGTAGAAGATGCCCTTGAATCGTTGAGGCAGAGCTGTGAATTTGTTTGTCCCAATGATGGTTTTCTTGAGCAGTTGAAAATGTTTGAGGGGATGGGTTTCAAGGTTGATCACTCCAGCCCTATATACAAGCGCTTTCGTCTAAAAATACTATATGAAAATCATTTCTCAGGGTTGAGGATAGACAGTTCCAAACTTGGTGCAGATCCTGGCATGCCTGTTGAAATTTCTTCAGAGGCAGAAGAAACTACTAAAGTTGAAAATAATCATAGTCCTACATATCGCTGTAAGAAGTGCCGACGACTTGTTGCATTGCAAGAACATGTCATAGACCATGTTCCTGGTGAGGGTGAGAGAGCCTTTGAGTTCCACAAACGGAGAGGTGGCAACCCTTTCAACAAATCTGATGAATTTGAGTGTTCATCTGTATTTATTGAGCCTCTACGGTGGATGAAAGCTGTTGAGGAAGGTGCAATGGAGGGAAAGCTGTCCTGTGCTCATTGTGATGCCCGTTTGGGATACTTCAATTGGTCAGGCATACAATGCAGCTGCGGAAGCTGGATAACTCCAGCTTTTCAACTCCACAAAAGCTGGATAGATGTGAGTCCCATGTAA

Predicted protein sequences of Glyma03g28180

Limit To All Plant Sequences

>Glyma03g28180.1   sequence type=predicted peptide   gene model=Glyma03g28180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPYTVRENLSIGNIGDAAEILENGAAQSVTHILSVLSSASISFFSEWKTTLSIPAMEITKVHVADAAAKSALPPEKLLYSLEYAGRDLKLVRMAVPLRDTEKDDLLDYLEVCIDFIDRGRKEGSVLVHCFAGVSRSAAIITAYLMRTERLSVEDALESLRQSCEFVCPNDGFLEQLKMFEGMGFKVDHSSPIYKRFRLKILYENHFSGLRIDSSKLGADPGMPVEISSEAEETTKVENNHSPTYRCKKCRRLVALQEHVIDHVPGEGERAFEFHKRRGGNPFNKSDEFECSSVFIEPLRWMKAVEEGAMEGKLSCAHCDARLGYFNWSGIQCSCGSWITPAFQLHKSWIDVSPM*

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