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Report for Sequence Feature Glyma03g28130

Feature Type:gene_model
Chromosome:Gm03
Start:36011811
stop:36015778
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma03g28130
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G73590AT Annotation by Michelle Graham. TAIR10: Auxin efflux carrier family protein | chr1:27659772-27662876 FORWARD LENGTH=622 SoyBaseE_val: 0ISS
GO:0008361GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell size SoyBaseN/AISS
GO:0009165GO-bp Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process SoyBaseN/AISS
GO:0009624GO-bp Annotation by Michelle Graham. GO Biological Process: response to nematode SoyBaseN/AISS
GO:0009630GO-bp Annotation by Michelle Graham. GO Biological Process: gravitropism SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009887GO-bp Annotation by Michelle Graham. GO Biological Process: organ morphogenesis SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0009926GO-bp Annotation by Michelle Graham. GO Biological Process: auxin polar transport SoyBaseN/AISS
GO:0009944GO-bp Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010051GO-bp Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation SoyBaseN/AISS
GO:0010073GO-bp Annotation by Michelle Graham. GO Biological Process: meristem maintenance SoyBaseN/AISS
GO:0010089GO-bp Annotation by Michelle Graham. GO Biological Process: xylem development SoyBaseN/AISS
GO:0010229GO-bp Annotation by Michelle Graham. GO Biological Process: inflorescence development SoyBaseN/AISS
GO:0010338GO-bp Annotation by Michelle Graham. GO Biological Process: leaf formation SoyBaseN/AISS
GO:0010358GO-bp Annotation by Michelle Graham. GO Biological Process: leaf shaping SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0016310GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorylation SoyBaseN/AISS
GO:0043481GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light SoyBaseN/AISS
GO:0044036GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0048367GO-bp Annotation by Michelle Graham. GO Biological Process: shoot development SoyBaseN/AISS
GO:0048439GO-bp Annotation by Michelle Graham. GO Biological Process: flower morphogenesis SoyBaseN/AISS
GO:0048443GO-bp Annotation by Michelle Graham. GO Biological Process: stamen development SoyBaseN/AISS
GO:0048519GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0048826GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon morphogenesis SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009925GO-cc Annotation by Michelle Graham. GO Cellular Compartment: basal plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0045177GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apical part of cell SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF03547PFAM Membrane transport protein JGI ISS
UniRef100_Q673E5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Auxin efflux carrier component n=2 Tax=Medicago truncatula RepID=Q673E5_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002339D4AUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339D4A related cluster n=1 Tax=unknown RepID=UPI0002339D4A SoyBaseE_val: 0ISS

Expression Patterns of Glyma03g28130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma03g28130 not represented in the dataset
Glyma03g28130 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28130
ParalogEvidenceComments
Glyma19g30900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28130 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.03g126000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma03g28130
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma03g28130
>Glyma03g28130.2   sequence type=CDS   gene model=Glyma03g28130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAACTTTGTGGGACTTGTACCACGTTCTGACCGCGGTGGTGCCGCTCTACGTGGCGATGATCCTGGCCTACGGGTCCGTGAAGTGGTGGAAGATCTTCACCCCTGACCAATGCTCCGGCATAAACCGCTTCGTGGCACTCTTCGCAGTCCCACTCCTCTCCTTCCACTTCATCTCCACCAACAACCCTTATGCCATGAACTACAAGTTCATCGCCGCAGACTCGCTCCAGAAAGCCATAGTCCTCGCAGTGCTCTTGGTGTGGTCAAGAACTAGCTCAAGAGGCTCACTTGAATGGTCCATAACACTCTTCTCTCTCTCAACACTCCCCAACACGTTGGTAATGGGTATCCCATTGCTGAAGGGGATGTACGGTGATGCCTCGGGAACACTCATGGTTCAGATTGTGGTGCTTCAGTGTATTATTTGGTACACCCTTATGCTGTTTTTGTTTGAGTATAGGGGCGCGAGGCTTCTTATAGTGGAGCAGTTTCCTGATACTGCGGCTTCGATTATTTCATTCAAGGTTGATTCGGATATTATTTCGTTGGATGGGAAGGAGCCGCTTCAGACGGAGGCGGAGGTTGGTGATGACGGGAAGCTTCATGTGACGGTGAGGAAGTCGGCGAGTTCGCGGTCGGAGATTTTCTCTAGGCGCTCTCATGGCCCCAACTCGGTGTCGTTGACTCCGAGGCCTTCGAATTTGACCAATGCGGAGATTTACTCGCTGCAGAGCTCGAGGAACCCGACTCCGAGAGGCTCGAGTTTTAACCACACGGATTTTTACTCCATGGTGAATGGTAAGAACAACAACAACAACAACAACAACGTGAGTATGAGTCCGAGGCAGAGTAATTTTGGAGGCTTTGATGAAGAAAGTGGTGGGGGTGTGAGGGTGAATGGTGGTGCTGGTGTAGGTGGGTACCCTGGGCCTGCGAATGCGGGGATTTTTTCTCCGGTGGCGGCGAAGAAGAAGGGTGGTGAGAGTGGTGGTGGAGGGAAGGATCTCCACATGTTTGTGTGGAGTTCGAGTGCTTCGCCGGTGTCGGAAGGTGGAATCCATGTCTTCAGAGGTGGTGGTGGGGATTATGGGAGTGACCAGCTTCCTGTTGGTGGGGTGGCTCACCAGAAAGATTATGATGAGTTTGGTCACGATGAGTTTAGCTTCGGGAACAGAACCGTTGCTAATGGGGTTGACAAGGAAGGGCCAGTGCTTTCAAAGCTTGGCTCGAGTTCCACAGCTGAGCTTCGCCCTAAAGCTCAAGGTGAAGCCAAACCTACTTCCATGCCACCAACAAGTGTTATGACAAGGCTCATTTTGATTATGGTTTGGAGGAAGCTGATTAGGAACCCCAACACATATTCCAGCCTCTTTGGTCTCACTTGGTCTTTGATCTCATTCAAATGGAATGTTGTTATGCCAGCAATTGTTGCTAAATCGATATCAATTTTATCTGATGCTGGTCTTGGGATGGCAATGTTTAGCCTTGGGTTATTCATGGCATTGCAGCCAAAGATTATTGCGTGTGGAAACTCGGTTGCTTCCTTTGCTATGGCAGTTCGTTTTCTTACTGGTCCTGCAGTCATGGCTGTTGCTTCAATCGTAGTAGGGCTCAGGGGAGTTCTGTTGCACATTGCTATCGTACAGGCTGCTCTGCCTCAAGGGATTGTTCCTTTTGTGTTTGCTAAGGAATATAACGTTCATCCTGACATACTAAGCACGGGGGTTATATTTGGGATGCTAATTGCTCTTCCTATTACTCTAGTTTACTACATTTTGCTTGGACTTTGA
Predicted protein sequences of Glyma03g28130
>Glyma03g28130.2   sequence type=predicted peptide   gene model=Glyma03g28130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MITLWDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNNPYAMNYKFIAADSLQKAIVLAVLLVWSRTSSRGSLEWSITLFSLSTLPNTLVMGIPLLKGMYGDASGTLMVQIVVLQCIIWYTLMLFLFEYRGARLLIVEQFPDTAASIISFKVDSDIISLDGKEPLQTEAEVGDDGKLHVTVRKSASSRSEIFSRRSHGPNSVSLTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMVNGKNNNNNNNNVSMSPRQSNFGGFDEESGGGVRVNGGAGVGGYPGPANAGIFSPVAAKKKGGESGGGGKDLHMFVWSSSASPVSEGGIHVFRGGGGDYGSDQLPVGGVAHQKDYDEFGHDEFSFGNRTVANGVDKEGPVLSKLGSSSTAELRPKAQGEAKPTSMPPTSVMTRLILIMVWRKLIRNPNTYSSLFGLTWSLISFKWNVVMPAIVAKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVASFAMAVRFLTGPAVMAVASIVVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL*






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