Glyma03g28060 - SoyBase

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Report for Sequence Feature Glyma03g28060

Feature Type:	gene_model
Chromosome:	Gm03
Start:	35913439
stop:	35917493
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g28060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28110	AT	Annotation by Michelle Graham. TAIR10: serine carboxypeptidase-like 45 \| chr1:9804153-9806832 REVERSE LENGTH=461	SoyBase	E_val: 4.00E-179	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004185	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type carboxypeptidase activity	SoyBase	N/A	ISS
KOG1282	KOG	Serine carboxypeptidases (lysosomal cathepsin A)	JGI		ISS
PTHR11802	Panther	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	JGI		ISS
PTHR11802:SF8	Panther	SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE D) (PLANTS)	JGI		ISS
PF00450	PFAM	Serine carboxypeptidase	JGI		ISS
UniRef100_B9S3Q9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine carboxypeptidase, putative n=1 Tax=Ricinus communis RepID=B9S3Q9_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1JN31	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JN31_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma03g28060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28060

Paralog	Evidence	Comments
Glyma19g30820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g125200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g28060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma03g28060

Limit To All Plant Sequences

>Glyma03g28060.1   sequence type=CDS   gene model=Glyma03g28060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTCCCCAGCCATGGATCTTCTTGATAGCTACCATCATTGCAATTTCACTGTTCATGTCCTCACTGGTTGAGTCATTTCCAGTAGCTGATAAGGTCAAATCCTTGCCTGAACAGTCACCTGTTTCCTTCCAACAATTTGCTGGCTTTGTACCCGTTGATGACAAGAACCAGAGAGCTCTTTTTTACTACTTTGTTGAAGCAGAAACCAACCCTGCTTCAAAGCCTCTAGTTCTCTGGCTCAATGGAGGGCCTGGTTGTACATCTGTAGGAGTTGGAGCCTTCACAGAACATGGTCCTTTTGTTACAAATCAAGGAGAAGCTATTGAGAAAAATCAGTATAGTTGGAACAAAGAGGCAAACATTTTGTACCTAGAGTCACCAGCAGGCGTTGGATTCTCTTACTCTCTCAATTTGTCATTTTATAAAACACTGAACGATGAAATCACAGCCCGAGACAGTCTGGTTTTCCTGCGGCGCTGGTTTGCCAAGTTCCCAGAATACAAGAATAGAGATTTTTATATAACGGGAGAGAGTTATGGAGGTCACTATGTACCTCAACTTGCTGAACTCATAATTAAGAGTAAAGTGAATTTCAACCTAAAGGGCATAGCAATAGGAAACCCTCTTCTGGATTTCGACACTGATATGAATGCAGTCGATGAATATTACTGGTCTCATGGAATAATAAGTGATTATGCATACAAAATCAGGACCTCTCTATGTAACTCGTCTAGAGTATTAAGAGAATACTTCAGTGGCCAAATTTCCAAAGATTGTCTTGTTGCAGCTCAAAAAGTCTCAGAAGAATATTCTTTTACAAATTTCATCGACCCATATTACGTTGTTGGGGAGAAATGTCTTTCTTACAATGTTTCTCAGGCAGGTTTTCTTAGGGAGACGCTAAATTCAGGGATGTTTCAGTTTAGGAACTCTCATTATGTGCTTCAAACAGAAGAACCTGACCAGCAAGTTGATGAGTGTAATTTGAAATATTCAGAGATGTACTTGAACAGGAAAGATGTGCAGAAGGCTCTCCATGCCCGGCTGGAGGGAACCACCAAATATCGTTTGTGCAGCAAGATTGTACAAACAAATTATGACCCATTGAACAGAGAGATACCAACAATTAATGTTGTCGGCTTCCTTGTAAAATCAGGTCTTCGAGTCATCGTATACAGTGGGGATCAAGACTCTGTGATTCCATTCATGGGCACGAGAAGATTGGTTGATAGACTAGCAAAGACACTAGGACTTAAAACAACCCTGCCTTACAGTGCCTGGTTTGTGGACAAGCAGGTTGGAGGATGGACAAAAGTTTATGGCAATCACCTCACGTACACCACAATAAGAGGAGCTTCACATGGCACTCCAGCTACTCAACCAAAGAGATCTTTTGTTTTGTTTAATGCGTTTCTTCAAGGGAAACCACTCCCTAAAGCATGA

Predicted protein sequences of Glyma03g28060

Limit To All Plant Sequences

>Glyma03g28060.1   sequence type=predicted peptide   gene model=Glyma03g28060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFPQPWIFLIATIIAISLFMSSLVESFPVADKVKSLPEQSPVSFQQFAGFVPVDDKNQRALFYYFVEAETNPASKPLVLWLNGGPGCTSVGVGAFTEHGPFVTNQGEAIEKNQYSWNKEANILYLESPAGVGFSYSLNLSFYKTLNDEITARDSLVFLRRWFAKFPEYKNRDFYITGESYGGHYVPQLAELIIKSKVNFNLKGIAIGNPLLDFDTDMNAVDEYYWSHGIISDYAYKIRTSLCNSSRVLREYFSGQISKDCLVAAQKVSEEYSFTNFIDPYYVVGEKCLSYNVSQAGFLRETLNSGMFQFRNSHYVLQTEEPDQQVDECNLKYSEMYLNRKDVQKALHARLEGTTKYRLCSKIVQTNYDPLNREIPTINVVGFLVKSGLRVIVYSGDQDSVIPFMGTRRLVDRLAKTLGLKTTLPYSAWFVDKQVGGWTKVYGNHLTYTTIRGASHGTPATQPKRSFVLFNAFLQGKPLPKA*

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