SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05130 | AT | Annotation by Michelle Graham. TAIR10: DNA/RNA helicase protein | chr5:1512173-1514918 FORWARD LENGTH=862 | SoyBase | E_val: 0 | ISS |
| GO:0006259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA metabolic process | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016818 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | SoyBase | N/A | ISS |
| KOG1001 | KOG | Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily | JGI | ISS | |
| PTHR10799 | Panther | ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED | JGI | ISS | |
| PTHR10799:SF61 | Panther | CHROMODOMAIN HELICASE DNA BINDING PROTEIN | JGI | ISS | |
| PF00097 | PFAM | Zinc finger, C3HC4 type (RING finger) | JGI | ISS | |
| PF00176 | PFAM | SNF2 family N-terminal domain | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| PF08797 | PFAM | HIRAN domain | JGI | ISS | |
| UniRef100_A2Q4K2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA repair protein RAD5 n=1 Tax=Medicago truncatula RepID=A2Q4K2_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002337997 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002337997 related cluster n=1 Tax=unknown RepID=UPI0002337997 | SoyBase | E_val: 0 | ISS |
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Glyma03g28040 not represented in the dataset |
Glyma03g28040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g124900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g28040.1 sequence type=CDS gene model=Glyma03g28040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTGGCAAGAAGATGATCGTAGTTTCGAGTCTTCAGAATCGTCAGACAAATACCTGTTGGGCTTCATCATGTCCAACATCGTGGGCCTGCAGCACCACTCCGGCACCCTCCACGGCGAGCGTCCTCTGGTGGGCCTGGCCCGCGAGCCCCACAACCCGCACGACCCTCACGCCATCGTAGTCCTCAACACCCACAGCCTCTCCGTCGGCTACATCGAACGCTCCGTCGCCGCCGCCCTCTCCCCCCTCATCGACCAAAACCTCGTCAAAGTCGAAGCCATCGTCCCCACCGCCCGCAATGCCCACCGCATCCCCTGCCAGATTCACGTCTTCGCCCGCGTTTCCGACTTCAGCGCCGTCGAAAACGCCGTCGAGGACGCCGGGCTCAAGATCATCACCGGGTCCGACGCCTCCTTCACCCTCTCCGACTCCGTCGCCGTCAAGGAGACCCGCGCGCAGAAGAAGTCGTCCTCCGTCGACGCCATTTTCAAGAAAGTCAACCGAAGCTACACCGGCAAGAACCCTGCTATCCAAATCCTGGAGCCTCCGAGGACCATCATCAGAACAGAGCTTCTCCAGCACCAGAAGGAGGGTCTCGCATGGCTCGTCCATCGCGAAAATTCCGATGATCTCCCCCCGTTCTGGGAAGAAAATGAAGGCAAATTCGTGAATATCTTGACAGATTATCAATCGGATAACCGGCCTGACCCTTTACGAGGTGGTATCTTCGCCGACGAAATGGGGTTGGGAAAGACCCTAACTTTGCTTTCTTTGATTGCTTTTGATAAAAAGAGCCAAATGGGTGTCTCGAAGAAGTGGAGAACTGACAGAAAGGTTGTTACTTTGGAGAAAAGAAGAATGCGTGAAAGTGAGAATGAAAGTGAGAGCAGTTCCCCTGAGAAGGGATTTAGAACAAATGCAACCTTGGTGGTGTGTCCTCCTTCTGTTATGTCGACGTGGATCACACAATTGGAGGAACACACTGTGCCTGGTGCATTGAAGACTTACATGTATTATGGAGAAAGGAGGACGGATGATCCTTTTGATCTCAATAGGTATGATCTGGTGTTGACCACATATGGTATTTTGGCTGGCGAACACTGTATGCCCAAGATGCCGGCTAAGAATATGTATTGGCGGAGAATTGTGCTGGATGAGGCACACACCATCAAGAATTTCAATGCTCTGCAGAGTTTGGCGGTTAGCAAGTTGAATGCTCAGTGCAGATGGGCTGTCACAGGGACGCCAATTCAGAGTGGTTGCATTGATTTGTTTTCTATAATGGTCTTTTTGCGGTTTCAACCCTTTTCAGTGAGACAACAATGGAGAGAGTTGGTGCAACGATCTCTTAATAAGGGCAAAGACAAAGGGCTTGTACGTTTGCAGATTTTGATGGAGGCAATTGCTTTGCGAAGAACAAAAGATATGACATTGGTGGGGCTGCCACCCAAAACCATTGAGATTTGTTATGTCGAGCTTTCTTTTGATGAACGTCAAATGTATGATCAGTTGAAACAGGATACAAAGATATTTTTGAGTAGGTATGCCCATGATGACAGTCTAGTGCCCCATTATTCTGCTGTACTAAGTAGGATTCTAAGACTTCGCCAAATCTGTACTGATTCAAAACTGTGGAATGTTCAGTCGCTACTCCTTACAAATATTGAAGATGCCTCCAATAATCCTGAACTGCTGCAAGCATTACTTGGGCAGGTGCAAGATGGTGAAGATTTTGACTGTCCAATTTGTTTGTCTCCCCCGATAGAGATTGTGATCACACGTTGTGCTCACATCTTCTGCCGAATCTGTATTCTGAGAGCTCTACAAAATAAAAACCCATGTTGTCCTCTTTGCCGGCGCCGCCTCAAAGAATCTGACTTGTTCTCAGCCCCTCCCGAGTCTTCCAAGGTAGATAGTGCTGGAGAGTGCTCATCATCACAAACAGTGTTACCCTCCAAAGTGTCTACATTGATAAAACTTCTTACAGAATCGAGGGACCAACATCCAGCTGCAAAGTCTGTTGTATTTTCACAATTTCGAAAGCTGCTATTGTTAATGGAAGAGCCTTTGAATGCAGCTGGATTCAAGACCCTGCGTCTTGATGGGACAATGAATGCTAAACACAGGGCCAATGTTATTGAGCAGTTTCAATCCCAAGGAATAGATGGGCCAACAGTTCTGCTTGCAAGCCTCAGGGCTTCAAGTGCAGGTATAAATCTGACATCTGCCTCTAGACTGTACTTCATGGAGCCATGGTGGAACCATGCAGTTGAGGAACAGGCGATGGATCGTGTCCACCGCATTGGTCAGAAAGAGGCTGTGAAGATTGTTCGATTGATTGCTCAAAACAGCATTGAAGAACAAATATTGGTGTTACAGGAGAAGAAGAAACAACTGCCTAGGGAACCATCTGGGACAGGATTAAAGGGCATGGGCATAAATGATATACATTTCCTTTTAGATCACTAG
>Glyma03g28040.1 sequence type=predicted peptide gene model=Glyma03g28040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDWQEDDRSFESSESSDKYLLGFIMSNIVGLQHHSGTLHGERPLVGLAREPHNPHDPHAIVVLNTHSLSVGYIERSVAAALSPLIDQNLVKVEAIVPTARNAHRIPCQIHVFARVSDFSAVENAVEDAGLKIITGSDASFTLSDSVAVKETRAQKKSSSVDAIFKKVNRSYTGKNPAIQILEPPRTIIRTELLQHQKEGLAWLVHRENSDDLPPFWEENEGKFVNILTDYQSDNRPDPLRGGIFADEMGLGKTLTLLSLIAFDKKSQMGVSKKWRTDRKVVTLEKRRMRESENESESSSPEKGFRTNATLVVCPPSVMSTWITQLEEHTVPGALKTYMYYGERRTDDPFDLNRYDLVLTTYGILAGEHCMPKMPAKNMYWRRIVLDEAHTIKNFNALQSLAVSKLNAQCRWAVTGTPIQSGCIDLFSIMVFLRFQPFSVRQQWRELVQRSLNKGKDKGLVRLQILMEAIALRRTKDMTLVGLPPKTIEICYVELSFDERQMYDQLKQDTKIFLSRYAHDDSLVPHYSAVLSRILRLRQICTDSKLWNVQSLLLTNIEDASNNPELLQALLGQVQDGEDFDCPICLSPPIEIVITRCAHIFCRICILRALQNKNPCCPLCRRRLKESDLFSAPPESSKVDSAGECSSSQTVLPSKVSTLIKLLTESRDQHPAAKSVVFSQFRKLLLLMEEPLNAAGFKTLRLDGTMNAKHRANVIEQFQSQGIDGPTVLLASLRASSAGINLTSASRLYFMEPWWNHAVEEQAMDRVHRIGQKEAVKIVRLIAQNSIEEQILVLQEKKKQLPREPSGTGLKGMGINDIHFLLDH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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