Glyma03g28000 - SoyBase

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Report for Sequence Feature Glyma03g28000

Feature Type:	gene_model
Chromosome:	Gm03
Start:	35806178
stop:	35810507
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma03g28000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05140	AT	Annotation by Michelle Graham. TAIR10: Transcription elongation factor (TFIIS) family protein \| chr5:1520353-1522297 FORWARD LENGTH=436	SoyBase	E_val: 2.00E-113	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PTHR15141	Panther	ELONGIN A-RELATED	JGI		ISS
PTHR15141:SF35	Panther		JGI		ISS
PF08711	PFAM	TFIIS helical bundle-like domain	JGI		ISS
UniRef100_I1JN28	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JN28_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FHK9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Probable mediator of RNA polymerase II transcription subunit 26b n=1 Tax=Arabidopsis thaliana RepID=MD26B_ARATH	SoyBase	E_val: 7.00E-111	ISS

Expression Patterns of Glyma03g28000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma03g28000

Paralog	Evidence	Comments
Glyma19g30780	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma03g28000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.03g124700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma03g28000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma03g28000

Limit To All Plant Sequences

>Glyma03g28000.3   sequence type=transcript   gene model=Glyma03g28000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATAATCAAAATATAGCCAAAGATAAAGGAAGAGGAGAGAGAATAGAGAGAAAGAGACGCAAACACTCATTTATCTTTTTCTACGTTTTTCATCCAAAAACCTTTTCTCTCAACCATTGCGTCTGTTTGATCAAAGTCAAAACACACCCAAAAAGACCACCATTCGCAATAACACAACACAGCACAAACCCCTTTATCTCTTCTCTCCCTTTCAACACAACACAAGTGGTTTTTCGTTTTCTCAAACAAGAACCAGTTCCTTAAGCACGCGGTATTTGTCTCTGTCTCCTCGGTGCAACATTACGTACCCACACACACTACTACTGCAATAGGGGATCGAGAAAAACAAACAGCATCATCCCAGTGACGACGACGATCACATTTTAATGAGAATCCGAATTTGAGATTGTTGGAATTTTATCTTTCAAGATTTTGGATCTGCGAGGATGAAGTCTTGGTCACTGGACGAGTGGAGGAACTACTTCGGGTCTGCGAATTCGGATATATTCGAGATAATTGAGCACGCCATAATTGTGGCGGCTTCGGATTGTCCTAAGGAGTTTAGAGTGAGGAGGGATTGGATTGCAGAGAGGTTGTTTTCTTGCAGGTTGACTCGGTGTGTGGGGTGTGACCGTGTTGAGTTGGCTGTGGGTGCAGATAGTAAAAAAGAGAAACATGATGGTGATGATGGTGATAATGATAAGAGTGGGTTTGAGAGAGATGGGGTTGAGTTTGAAGGTGCAGGGGCAAGCAAAGAGAGCAAGGTCAATGGGGATGCGAATCTTGGTGACAGCAATTATAGCTTTGGGGAGGCTGAAGCATTAAGTGATGAGATGGAAGAGGAGTCTCAGTATGTTGCGGAGATTTTGAGGATCAAGGATGTTCTGCTTAACCCTGAAGATGAGTCTGAGGCTGTGATATTTGAGTCATTGAGGAGGCTTCAGTTGATGGAACTCACCGTGGACTGTTTAAAGGCAACGGAGATTGGCAAGGCGGTCAATCCTCTCCGGAAACATGGATCGAAGGACATTCGTCAACTTGCCAGGACTCTCATCAATGGCTGGAAAGAAATGGTGGATGAGTGGGTTAAGGCCACTACTACCACAGCTATCACAGGTTCAGAAGAAGGTACACCAGATTCAGTGAATCCATCCGTTGTAGATGATGATGAAGAAGAAGGACTTCCATCACCTCCCTTGGATGAAGGGGCTTTCTTTGTCACTCAGGCTGGTTCAATGGAGCTGTCACAGTTCTTTGATGGCATGGACGACGATGGAAATCCTCGACCAACTGGACCATTCAGCAAGAACCATGAGAATGGCAGAAAGCCAGCTTTTGACAGCCATGTTTTAGAGATGAGGAAGTTGCAGCCTTCCCATGACACAGTCGTCATTAACAGAGATGTTAAGAGTCAGCAACAAGCAAAGGAAAACAAGGCTGCTGTCATGCCTGTGAGGCCAAATAAACCTGTAACAGCTGATTCCGGGCCTGGCAGACCCCCAAAATCAAATGTGCAGCGAAAAAGTAATATGGAGCCAAAGATGCAGCAAAAAATGGAGAACAATTCAATCACTAGGAGGCCTCCAACTGCTCAGTTAGATAAATCCAAGCGTTCAGATGACGATGCAGTCCAAGTAAAGCTAGAAGCCACCAAGAGAAAACTTCAGGAGAGCTATCAACAAGCTGAAAAAGCCAAGAGGCAGAGAACAATACAAGTTATGGAAATAAACGATCTTCCCAAGCAAGGTTTGCACCGAAATACACATTTCAAACCTGGATATCACAGTAGGCATTGGGCTAATGGTCGAAGATAAAGCTATTATTCTATGGTGGACCTTCAGATTTAACAGTATTTCCAAGCTGTTTGTTCCAAATGGGTTGAAGATTGGTCCCCTTGATTGTAGAAAATAACAAAATCCATTCACCATTTGGACTTGCATAGAATTATTCCAATTGAGAGGGAAGTAAACCTTTAAACACTGTTTATTTTCCCAGTTTATAGGAGTTAAAGTAAATAGGAATTTTGTTTCATTCTAGATCGGATTTTTAGAAGAGGATCCTAACTTGGGGCACCTCTACTTTTGACTTGCTTCCATAATGATTGTCTATAGAAATCTCAATTGTTTCTAGACATTTTTCTTGTCACATGACTTACTAGGGTCTCATATATAAGTTAGTATATACACCCTTTGGAAGTGCTTTGTCACAACCTCAATGGTCTTTAAACTCCTAGATGTGATTATGTTAGCAGGTGTATAAGAATTTTAATATGAAATAACATTCAATCATTTTTTTAAGCCATT

Coding sequences of Glyma03g28000

Limit To All Plant Sequences

>Glyma03g28000.2   sequence type=CDS   gene model=Glyma03g28000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTCTTGGTCACTGGACGAGTGGAGGAACTACTTCGGGTCTGCGAATTCGGATATATTCGAGATAATTGAGCACGCCATAATTGTGGCGGCTTCGGATTGTCCTAAGGAGTTTAGAGTGAGGAGGGATTGGATTGCAGAGAGGTTGTTTTCTTGCAGGTTGACTCGGTGTGTGGGGTGTGACCGTGTTGAGTTGGCTGTGGGTGCAGATAGTAAAAAAGAGAAACATGATGGTGATGATGGTGATAATGATAAGAGTGGGTTTGAGAGAGATGGGGTTGAGTTTGAAGGTGCAGGGGCAAGCAAAGAGAGCAAGGTCAATGGGGATGCGAATCTTGGTGACAGCAATTATAGCTTTGGGGAGGCTGAAGCATTAAGTGATGAGATGGAAGAGGAGTCTCAGTATGTTGCGGAGATTTTGAGGATCAAGGATGTTCTGCTTAACCCTGAAGATGAGTCTGAGGCTGTGATATTTGAGTCATTGAGGAGGCTTCAGTTGATGGAACTCACCGTGGACTGTTTAAAGGCAACGGAGATTGGCAAGGCGGTCAATCCTCTCCGGAAACATGGATCGAAGGACATTCGTCAACTTGCCAGGACTCTCATCAATGGCTGGAAAGAAATGGTGGATGAGTGGGTTAAGGCCACTACTACCACAGCTATCACAGGTTCAGAAGAAGGTACACCAGATTCAGTGAATCCATCCGTTGTAGATGATGATGAAGAAGAAGGACTTCCATCACCTCCCTTGGATGAAGGGGCTTTCTTTGTCACTCAGGCTGGTTCAATGGAGCTGTCACAGTTCTTTGATGGCATGGACGACGATGGAAATCCTCGACCAACTGGACCATTCAGCAAGAACCATGAGAATGGCAGAAAGCCAGCTTTTGACAGCCATGTTTTAGAGATGAGGAAGTTGCAGCCTTCCCATGACACAGTCGTCATTAACAGAGATGTTAAGAGTCAGCAACAAGCAAAGGAAAACAAGGCTGCTGTCATGCCTGTGAGGCCAAATAAACCTGTAACAGCTGATTCCGGGCCTGGCAGACCCCCAAAATCAAATGTGCAGCGAAAAAGTAATATGGAGCCAAAGATGCAGCAAAAAATGGAGAACAATTCAATCACTAGGAGGCCTCCAACTGCTCAGTTAGATAAATCCAAGCGTTCAGATGACGATGCAGTCCAAGTAAAGCTAGAAGCCACCAAGAGAAAACTTCAGGAGAGCTATCAACAAGCTGAAAAAGCCAAGAGGCAGAGAACAATACAAGTTATGGAAATAAACGATCTTCCCAAGCAAGGTTTGCACCGAAATACACATTTCAAACCTGGATATCACAGTAGGCATTGGGCTAATGGTCGAAGATAA

>Glyma03g28000.3   sequence type=CDS   gene model=Glyma03g28000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTCTTGGTCACTGGACGAGTGGAGGAACTACTTCGGGTCTGCGAATTCGGATATATTCGAGATAATTGAGCACGCCATAATTGTGGCGGCTTCGGATTGTCCTAAGGAGTTTAGAGTGAGGAGGGATTGGATTGCAGAGAGGTTGTTTTCTTGCAGGTTGACTCGGTGTGTGGGGTGTGACCGTGTTGAGTTGGCTGTGGGTGCAGATAGTAAAAAAGAGAAACATGATGGTGATGATGGTGATAATGATAAGAGTGGGTTTGAGAGAGATGGGGTTGAGTTTGAAGGTGCAGGGGCAAGCAAAGAGAGCAAGGTCAATGGGGATGCGAATCTTGGTGACAGCAATTATAGCTTTGGGGAGGCTGAAGCATTAAGTGATGAGATGGAAGAGGAGTCTCAGTATGTTGCGGAGATTTTGAGGATCAAGGATGTTCTGCTTAACCCTGAAGATGAGTCTGAGGCTGTGATATTTGAGTCATTGAGGAGGCTTCAGTTGATGGAACTCACCGTGGACTGTTTAAAGGCAACGGAGATTGGCAAGGCGGTCAATCCTCTCCGGAAACATGGATCGAAGGACATTCGTCAACTTGCCAGGACTCTCATCAATGGCTGGAAAGAAATGGTGGATGAGTGGGTTAAGGCCACTACTACCACAGCTATCACAGGTTCAGAAGAAGGTACACCAGATTCAGTGAATCCATCCGTTGTAGATGATGATGAAGAAGAAGGACTTCCATCACCTCCCTTGGATGAAGGGGCTTTCTTTGTCACTCAGGCTGGTTCAATGGAGCTGTCACAGTTCTTTGATGGCATGGACGACGATGGAAATCCTCGACCAACTGGACCATTCAGCAAGAACCATGAGAATGGCAGAAAGCCAGCTTTTGACAGCCATGTTTTAGAGATGAGGAAGTTGCAGCCTTCCCATGACACAGTCGTCATTAACAGAGATGTTAAGAGTCAGCAACAAGCAAAGGAAAACAAGGCTGCTGTCATGCCTGTGAGGCCAAATAAACCTGTAACAGCTGATTCCGGGCCTGGCAGACCCCCAAAATCAAATGTGCAGCGAAAAAGTAATATGGAGCCAAAGATGCAGCAAAAAATGGAGAACAATTCAATCACTAGGAGGCCTCCAACTGCTCAGTTAGATAAATCCAAGCGTTCAGATGACGATGCAGTCCAAGTAAAGCTAGAAGCCACCAAGAGAAAACTTCAGGAGAGCTATCAACAAGCTGAAAAAGCCAAGAGGCAGAGAACAATACAAGTTATGGAAATAAACGATCTTCCCAAGCAAGGTTTGCACCGAAATACACATTTCAAACCTGGATATCACAGTAGGCATTGGGCTAATGGTCGAAGATAA

Predicted protein sequences of Glyma03g28000

Limit To All Plant Sequences

>Glyma03g28000.2   sequence type=predicted peptide   gene model=Glyma03g28000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSWSLDEWRNYFGSANSDIFEIIEHAIIVAASDCPKEFRVRRDWIAERLFSCRLTRCVGCDRVELAVGADSKKEKHDGDDGDNDKSGFERDGVEFEGAGASKESKVNGDANLGDSNYSFGEAEALSDEMEEESQYVAEILRIKDVLLNPEDESEAVIFESLRRLQLMELTVDCLKATEIGKAVNPLRKHGSKDIRQLARTLINGWKEMVDEWVKATTTTAITGSEEGTPDSVNPSVVDDDEEEGLPSPPLDEGAFFVTQAGSMELSQFFDGMDDDGNPRPTGPFSKNHENGRKPAFDSHVLEMRKLQPSHDTVVINRDVKSQQQAKENKAAVMPVRPNKPVTADSGPGRPPKSNVQRKSNMEPKMQQKMENNSITRRPPTAQLDKSKRSDDDAVQVKLEATKRKLQESYQQAEKAKRQRTIQVMEINDLPKQGLHRNTHFKPGYHSRHWANGRR*

>Glyma03g28000.3   sequence type=predicted peptide   gene model=Glyma03g28000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKSWSLDEWRNYFGSANSDIFEIIEHAIIVAASDCPKEFRVRRDWIAERLFSCRLTRCVGCDRVELAVGADSKKEKHDGDDGDNDKSGFERDGVEFEGAGASKESKVNGDANLGDSNYSFGEAEALSDEMEEESQYVAEILRIKDVLLNPEDESEAVIFESLRRLQLMELTVDCLKATEIGKAVNPLRKHGSKDIRQLARTLINGWKEMVDEWVKATTTTAITGSEEGTPDSVNPSVVDDDEEEGLPSPPLDEGAFFVTQAGSMELSQFFDGMDDDGNPRPTGPFSKNHENGRKPAFDSHVLEMRKLQPSHDTVVINRDVKSQQQAKENKAAVMPVRPNKPVTADSGPGRPPKSNVQRKSNMEPKMQQKMENNSITRRPPTAQLDKSKRSDDDAVQVKLEATKRKLQESYQQAEKAKRQRTIQVMEINDLPKQGLHRNTHFKPGYHSRHWANGRR*

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