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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G56680 | AT | Annotation by Michelle Graham. TAIR10: Single-stranded nucleic acid binding R3H protein | chr3:20991537-20993446 FORWARD LENGTH=353 | SoyBase | E_val: 2.00E-116 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| KOG2953 | KOG | mRNA-binding protein Encore | JGI | ISS | |
| PTHR15672 | Panther | CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN | JGI | ISS | |
| PTHR15672:SF1 | Panther | PROTEIN PHOSPHATASE-RELATED | JGI | ISS | |
| UniRef100_A2Q6F7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: R3H domain-containing protein n=3 Tax=Medicago truncatula RepID=A2Q6F7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JN16 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JN16_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma03g27880 not represented in the dataset |
Glyma03g27880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma19g30690 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.03g123300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma03g27880.2 sequence type=transcript gene model=Glyma03g27880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGGTGGAGCGAACCGTACAAAGAAGATAACGCTAACGCGTTATTGTTGTTGTTATTATTCCTCAAATATGGATTCGTTGTGCCTCTCCAACGACTCAGTTGTTTCTGGATTCAAAGACAAGGAGTCAATGGTTGACCCCTTTTTGGTCGAGGCTCTCCAGAACCCTCGTCACCGCCTCACCATTTTGAGGATGGAGCTGGACATCCAGAAGTTTTTGAATAATGCTGATCAGCAGCATTTTGAGTTTCAACATTTCCCTTCTTCCTACCTCCGACTGGCTGCACACCGTGTTGCTCAACACTACAACATGCAAACAATGGTTCAAGATAATGGCTTAGATGGCCAGGGAAGTAAAATTCTGGTGAGGAAGTTACCAGAAAGCAAGTATCCTGTGGTTCGATTATCTGAAATACCTGCTAAGCAGTTGGAAAATGATAAATCTGAGCTGAAAAAATTTGTTATTAGACCTAGGCCCAATAGAAACAGTTTGAATGATGCCAACGGAGTTGGGACGAAAGGAAATCCTGTAAGAAGTGTGGAAGAAAGGAAGGAGGAATATGACCGGGCGCGGGCACGTATCTTTAGTAGCCCTAGAAGCTCTGAATCAGGCGATACCTCATCCATGGTTCCAATGGACGGGAGAAATTCTTCTACTAGCAAGGATGAGAATGAAACTAGCAAGAACCCCATGGCTGATTCAGAAAGATATATCAGTGTCAGGGATAGTTGTTCGACTCGAGTTGCCATACTCAGAGATAGGGAAAAGGATCGCAGTGATCCAGATTATGACCGTAGTTATGGAAGGTATGCTAGGAGTATCCCAGCCTCTGCTGTTAACTTGGTGCCATTTAACTTGCAAAAAGCTCAACCTTCATTTGCTCAATACGATGCTACATTTAACCAGTTGGGTCAGATGTCACAAACTCAAGCCTCACTTGGCTATGCACCTCCTTCAACCCCGATAATGAGTCCTTTTGGCACCCCAGGATTGAATCAGACATCTAGTGAGGGTGCTTACCTACAGTGGCCTAGTGCTGCAATGATGTATGCTCATTCATATGACCAATTTAGACATGGTGTTTTCCAGGCTCCATTTGGTCAACAGCCGTTGAGCTTTGACTATTCACAGAACTATTAGATGACATTTAGGGGGAGAATATTCAATTTGGATGCAAAAAGTTATGTTAGCTTTTTTAGAATTTCATGTTAAGTTCATTTGTCAGTTCTGTCATAGACCCTTATTGTAGGGATATGGCTTTGGTTTTCAGTTTTGATGGTTATAGTAAATCGTTGGGTACTTTTAATGTGACAGTTTATAAAATAGTGAATTGTAGTGTATCACTGGATTTGCAATATATGATAAGGTTTCTGTGGTTGCTTTATTAGTACCTTGTTTAATTTTGGATTTTAACGACTTACTTAT >Glyma03g27880.3 sequence type=transcript gene model=Glyma03g27880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGACGGGTGGAGCGAACCGTACAAAGAAGATAACGCTAACGCGTTGTTTCTGGATTCAAAGACAAGGAGTCAATGGTTGACCCCTTTTTGGTCGAGGCTCTCCAGAACCCTCGTCACCGCCTCACCATTTTGAGGATGGAGCTGGACATCCAGAAGTTTTTGAATAATGCTGATCAGCAGCATTTTGAGTTTCAACATTTCCCTTCTTCCTACCTCCGACTGGCTGCACACCGTGTTGCTCAACACTACAACATGCAAACAATGGTTCAAGATAATGGCTTAGATGGCCAGGGAAGTAAAATTCTGGTGAGGAAGTTACCAGAAAGCAAGTATCCTGTGGTTCGATTATCTGAAATACCTGCTAAGCAGTTGGAAAATGATAAATCTGAGCTGAAAAAATTTGTTATTAGACCTAGGCCCAATAGAAACAGTTTGAATGATGCCAACGGAGTTGGGACGAAAGGAAATCCTGTAAGAAGTGTGGAAGAAAGGAAGGAGGAATATGACCGGGCGCGGGCACGTATCTTTAGTAGCCCTAGAAGCTCTGAATCAGGCGATACCTCATCCATGGTTCCAATGGACGGGAGAAATTCTTCTACTAGCAAGGATGAGAATGAAACTAGCAAGAACCCCATGGCTGATTCAGAAAGATATATCAGTGTCAGGGATAGTTGTTCGACTCGAGTTGCCATACTCAGAGATAGGGAAAAGGATCGCAGTGATCCAGATTATGACCGTAGTTATGGAAGGTATGCTAGGAGTATCCCAGCCTCTGCTGTTAACTTGGTGCCATTTAACTTGCAAAAAGCTCAACCTTCATTTGCTCAATACGATGCTACATTTAACCAGTTGGGTCAGATGTCACAAACTCAAGCCTCACTTGGCTATGCACCTCCTTCAACCCCGATAATGAGTCCTTTTGGCACCCCAGGATTGAATCAGACATCTAGTGAGGGTGCTTACCTACAGTGGCCTAGTGCTGCAATGATGTATGCTCATTCATATGACCAATTTAGACATGGTGTTTTCCAGGCTCCATTTGGTCAACAGCCGTTGAGCTTTGACTATTCACAGAACTATTAGATGACATTTAGGGGGAGAATATTCAATTTGGATGCAAAAAGTTATGTTAGCTTTTTTAGAATTTCATGTTAAGTTCATTTGTCAGTTCTGTCATAGACCCTTATTGTAGGGATATGGCTTTGGTTTTCAGTTTTGATGGTTATAGTAAATCGTTGGGTACTTTTAATGTGACAGTTTATAAAATAGTGAATTGTAGTGTATCACTGGATTTGCAATATATGATAAGGTTTCTGTGGTTGCTTTATTAGTACCTTGTTTAATTTTGGATTTTAACGACTTACTTAT
>Glyma03g27880.1 sequence type=CDS gene model=Glyma03g27880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCGTTGTGCCTCTCCAACGACTCAGTTGTTTCTGGATTCAAAGACAAGGAGTCAATGGTTGACCCCTTTTTGGTCGAGGCTCTCCAGAACCCTCGTCACCGCCTCACCATTTTGAGGATGGAGCTGGACATCCAGAAGTTTTTGAATAATGCTGATCAGCAGCATTTTGAGTTTCAACATTTCCCTTCTTCCTACCTCCGACTGGCTGCACACCGTGTTGCTCAACACTACAACATGCAAACAATGGTTCAAGATAATGGCTTAGATGGCCAGGGAAGTAAAATTCTGGTGAGGAAGTTACCAGAAAGCAAGTATCCTGTGGTTCGATTATCTGAAATACCTGCTAAGCAGTTGGAAAATGATAAATCTGAGCTGAAAAAATTTGTTATTAGACCTAGGCCCAATAGAAACAGTTTGAATGATGCCAACGGAGTTGGGACGAAAGGAAATCCTGTAAGAAGTGTGGAAGAAAGGAAGGAGGAATATGACCGGGCGCGGGCACGTATCTTTAGTAGCCCTAGAAGCTCTGAATCAGGCGATACCTCATCCATGGTTCCAATGGACGGGAGAAATTCTTCTACTAGCAAGGATGAGAATGAAACTAGCAAGAACCCCATGGCTGATTCAGAAAGATATATCAGTGTCAGGGATAGTTGTTCGACTCGAGTTGCCATACTCAGAGATAGGGAAAAGGATCGCAGTGATCCAGATTATGACCGTAGTTATGGAAGGTATGCTAGGAGTATCCCAGCCTCTGCTGTTAACTTGGTGCCATTTAACTTGCAAAAAGCTCAACCTTCATTTGCTCAATACGATGCTACATTTAACCAGTTGGGTCAGATGTCACAAACTCAAGCCTCACTTGGCTATGCACCTCCTTCAACCCCGATAATGAGTCCTTTTGGCACCCCAGGATTGAATCAGACATCTAGTGAGGGTGCTTACCTACAGTGGCCTAGTGCTGCAATGATGTATGCTCATTCATATGACCAATTTAGACATGGTGTTTTCCAGGCTCCATTTGGTCAACAGCCGTTGAGCTTTGACTATTCACAGAACTATTAG >Glyma03g27880.2 sequence type=CDS gene model=Glyma03g27880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATTCGTTGTGCCTCTCCAACGACTCAGTTGTTTCTGGATTCAAAGACAAGGAGTCAATGGTTGACCCCTTTTTGGTCGAGGCTCTCCAGAACCCTCGTCACCGCCTCACCATTTTGAGGATGGAGCTGGACATCCAGAAGTTTTTGAATAATGCTGATCAGCAGCATTTTGAGTTTCAACATTTCCCTTCTTCCTACCTCCGACTGGCTGCACACCGTGTTGCTCAACACTACAACATGCAAACAATGGTTCAAGATAATGGCTTAGATGGCCAGGGAAGTAAAATTCTGGTGAGGAAGTTACCAGAAAGCAAGTATCCTGTGGTTCGATTATCTGAAATACCTGCTAAGCAGTTGGAAAATGATAAATCTGAGCTGAAAAAATTTGTTATTAGACCTAGGCCCAATAGAAACAGTTTGAATGATGCCAACGGAGTTGGGACGAAAGGAAATCCTGTAAGAAGTGTGGAAGAAAGGAAGGAGGAATATGACCGGGCGCGGGCACGTATCTTTAGTAGCCCTAGAAGCTCTGAATCAGGCGATACCTCATCCATGGTTCCAATGGACGGGAGAAATTCTTCTACTAGCAAGGATGAGAATGAAACTAGCAAGAACCCCATGGCTGATTCAGAAAGATATATCAGTGTCAGGGATAGTTGTTCGACTCGAGTTGCCATACTCAGAGATAGGGAAAAGGATCGCAGTGATCCAGATTATGACCGTAGTTATGGAAGGTATGCTAGGAGTATCCCAGCCTCTGCTGTTAACTTGGTGCCATTTAACTTGCAAAAAGCTCAACCTTCATTTGCTCAATACGATGCTACATTTAACCAGTTGGGTCAGATGTCACAAACTCAAGCCTCACTTGGCTATGCACCTCCTTCAACCCCGATAATGAGTCCTTTTGGCACCCCAGGATTGAATCAGACATCTAGTGAGGGTGCTTACCTACAGTGGCCTAGTGCTGCAATGATGTATGCTCATTCATATGACCAATTTAGACATGGTGTTTTCCAGGCTCCATTTGGTCAACAGCCGTTGAGCTTTGACTATTCACAGAACTATTAG >Glyma03g27880.3 sequence type=CDS gene model=Glyma03g27880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTGACCCCTTTTTGGTCGAGGCTCTCCAGAACCCTCGTCACCGCCTCACCATTTTGAGGATGGAGCTGGACATCCAGAAGTTTTTGAATAATGCTGATCAGCAGCATTTTGAGTTTCAACATTTCCCTTCTTCCTACCTCCGACTGGCTGCACACCGTGTTGCTCAACACTACAACATGCAAACAATGGTTCAAGATAATGGCTTAGATGGCCAGGGAAGTAAAATTCTGGTGAGGAAGTTACCAGAAAGCAAGTATCCTGTGGTTCGATTATCTGAAATACCTGCTAAGCAGTTGGAAAATGATAAATCTGAGCTGAAAAAATTTGTTATTAGACCTAGGCCCAATAGAAACAGTTTGAATGATGCCAACGGAGTTGGGACGAAAGGAAATCCTGTAAGAAGTGTGGAAGAAAGGAAGGAGGAATATGACCGGGCGCGGGCACGTATCTTTAGTAGCCCTAGAAGCTCTGAATCAGGCGATACCTCATCCATGGTTCCAATGGACGGGAGAAATTCTTCTACTAGCAAGGATGAGAATGAAACTAGCAAGAACCCCATGGCTGATTCAGAAAGATATATCAGTGTCAGGGATAGTTGTTCGACTCGAGTTGCCATACTCAGAGATAGGGAAAAGGATCGCAGTGATCCAGATTATGACCGTAGTTATGGAAGGTATGCTAGGAGTATCCCAGCCTCTGCTGTTAACTTGGTGCCATTTAACTTGCAAAAAGCTCAACCTTCATTTGCTCAATACGATGCTACATTTAACCAGTTGGGTCAGATGTCACAAACTCAAGCCTCACTTGGCTATGCACCTCCTTCAACCCCGATAATGAGTCCTTTTGGCACCCCAGGATTGAATCAGACATCTAGTGAGGGTGCTTACCTACAGTGGCCTAGTGCTGCAATGATGTATGCTCATTCATATGACCAATTTAGACATGGTGTTTTCCAGGCTCCATTTGGTCAACAGCCGTTGAGCTTTGACTATTCACAGAACTATTAG
>Glyma03g27880.1 sequence type=predicted peptide gene model=Glyma03g27880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSLCLSNDSVVSGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQKFLNNADQQHFEFQHFPSSYLRLAAHRVAQHYNMQTMVQDNGLDGQGSKILVRKLPESKYPVVRLSEIPAKQLENDKSELKKFVIRPRPNRNSLNDANGVGTKGNPVRSVEERKEEYDRARARIFSSPRSSESGDTSSMVPMDGRNSSTSKDENETSKNPMADSERYISVRDSCSTRVAILRDREKDRSDPDYDRSYGRYARSIPASAVNLVPFNLQKAQPSFAQYDATFNQLGQMSQTQASLGYAPPSTPIMSPFGTPGLNQTSSEGAYLQWPSAAMMYAHSYDQFRHGVFQAPFGQQPLSFDYSQNY* >Glyma03g27880.2 sequence type=predicted peptide gene model=Glyma03g27880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSLCLSNDSVVSGFKDKESMVDPFLVEALQNPRHRLTILRMELDIQKFLNNADQQHFEFQHFPSSYLRLAAHRVAQHYNMQTMVQDNGLDGQGSKILVRKLPESKYPVVRLSEIPAKQLENDKSELKKFVIRPRPNRNSLNDANGVGTKGNPVRSVEERKEEYDRARARIFSSPRSSESGDTSSMVPMDGRNSSTSKDENETSKNPMADSERYISVRDSCSTRVAILRDREKDRSDPDYDRSYGRYARSIPASAVNLVPFNLQKAQPSFAQYDATFNQLGQMSQTQASLGYAPPSTPIMSPFGTPGLNQTSSEGAYLQWPSAAMMYAHSYDQFRHGVFQAPFGQQPLSFDYSQNY* >Glyma03g27880.3 sequence type=predicted peptide gene model=Glyma03g27880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVDPFLVEALQNPRHRLTILRMELDIQKFLNNADQQHFEFQHFPSSYLRLAAHRVAQHYNMQTMVQDNGLDGQGSKILVRKLPESKYPVVRLSEIPAKQLENDKSELKKFVIRPRPNRNSLNDANGVGTKGNPVRSVEERKEEYDRARARIFSSPRSSESGDTSSMVPMDGRNSSTSKDENETSKNPMADSERYISVRDSCSTRVAILRDREKDRSDPDYDRSYGRYARSIPASAVNLVPFNLQKAQPSFAQYDATFNQLGQMSQTQASLGYAPPSTPIMSPFGTPGLNQTSSEGAYLQWPSAAMMYAHSYDQFRHGVFQAPFGQQPLSFDYSQNY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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